Evidence map›Paper›PMID 39866329›Full record

ArticleNature physics2024

The biophysical basis of bacterial colony growth.

Aawaz R Pokhrel, Gabi Steinbach, Adam Krueger, Thomas C Day, Julianne Tijani, Pablo Bravo, Siu Lung Ng, Brian K Hammer, Peter J Yunker

Abstract read
In one paragraph

Article in Nature physics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Age-structured mechanical models for tumor growth.Journal of mathematical biology · 2026
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  4. Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Review
  12. Spatial population dynamics of bacterial colonies with social antibiotic resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Aawaz R PokhrelSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Gabi SteinbachSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Adam KruegerSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Thomas C DaySchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Julianne TijaniSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Pablo BravoSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.
Siu Lung NgSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Brian K HammerSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Peter J YunkerSchool of Physics, Georgia Institute of Technology, Atlanta, GA, USA.

Funding

The Biophysical Foundations of Bacterial Biofilm Growth and SurvivalR35GM138354 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Peter Yunker · 2020 to 2026
$2.0M
NIGMS NIH HHS R35 GM138354
6 · The paper itself

Abstract

Bacteria often attach to surfaces and grow densely-packed communities called biofilms. As biofilms grow, they expand across the surface, increasing their surface area and access to nutrients. Thus, the overall growth rate of a biofilm is directly dependent on its "range expansion" rate. One factor that limits the range expansion rate is vertical growth; at the biofilm edge there is a direct trade-off between horizontal and vertical growth-the more a biofilm grows up, the less it can grow out. Thus, the balance of horizontal and vertical growth impacts the range expansion rate and, crucially, the overall biofilm growth rate. However, the biophysical connection between horizontal and vertical growth remains poorly understood, due in large part to difficulty in resolving biofilm shape with sufficient spatial and temporal resolution from small length scales to macroscopic sizes. Here, we experimentally show that the horizontal expansion rate of bacterial colonies is strongly coupled to vertical expansion via the contact angle at the biofilm edge. Using white light interferometry, we measure the three-dimensional surface morphology of growing colonies, and find that small colonies are surprisingly well-described as spherical caps. At later times, nutrient diffusion and uptake prevent the tall colony center from growing exponentially. However, the colony edge always has a region short enough to grow exponentially; the size and shape of this region, characterized by its contact angle, along with cellular doubling time, determines the range expansion rate. We found that the geometry of the exponentially growing biofilm edge is well-described as a spherical-cap-napkin-ring, i.e., a spherical cap with a cylindrical hole in its center (where the biofilm is too tall to grow exponentially). We derive an exact expression for the spherical-cap-napkin-ring-based range expansion rate; further, to first order, the expansion rate only depends on the colony contact angle, the thickness of the exponentially growing region, and the cellular doubling time. We experimentally validate both of these expressions. In line with our theoretical predictions, we find that biofilms with long cellular doubling times and small contact angles do in fact grow faster than biofilms with short cellular doubling times and large contact angles. Accordingly, sensitivity analysis shows that biofilm growth rates are more sensitive to their contact angles than to their cellular growth rates. Finally, we show that a simple biophysical model connecting vertical and horizontal growth dynamics can reproduce the above phenomena, suggesting that the spherical cap and spherical cap napkin ring shapes emerge due to the biophysical consequences of diffusion-limited growth. Thus, to understand the fitness of a growing biofilm, one must account for its shape, not just its cellular doubling time.

Indexed as

Biofilmsbiomechanicsgeometrysurface

Identifiers

PMID39866329
PMCPMC11756906

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.