Evidence map›Paper›PMID 39862860›Full record

ArticleStructure (London, England : 1993)2025

Structures and mRNP remodeling mechanism of the TREX-2 complex.

Yihu Xie, Bradley P Clarke, Dongqi Xie, Menghan Mei, Prasanna Bhat, Pate S Hill, Alexia E Angelos, Tolga Çağatay, Mariam Haider, Scott E Collier and 5 more

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  12. Review
  13. Review
  14. Identification of divergentbioRxiv : the preprint server for biology · 2025
    Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yihu XieDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA; Center for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA. Electronic address: yihu.xie@vanderbilt.edu.
Bradley P ClarkeDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA.
Dongqi XieDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Menghan MeiDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA.
Prasanna BhatDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Pate S HillDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA.
Alexia E AngelosDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA.
Tolga ÇağatayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Mariam HaiderCenter for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA.
Scott E CollierCenter for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA.
Melissa G ChambersCenter for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA.
Vasilisa AksenovaDivision of Molecular and Cellular Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Mary DassoDivision of Molecular and Cellular Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Beatriz M A FontouraDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yi RenDepartment of Biochemistry, Vanderbilt University School of Medicine Basic Sciences, Nashville, TN 37232, USA; Center for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA. Electronic address: yi.ren@vanderbilt.edu.

Funding

Mitotic roles of the Nuclear Transport MachineryZIAHD008954 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI DASSO, MARY C. · 2015 to 2025
$25.3M
Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Splicing and Nuclear Transport of Influenza Virus mRNAR01AI125524 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COBB, MELANIE H., FONTOURA, BEATRIZ MA · 2016 to 2025
$5.6M
Virulence Factor at the Interface of Viral and Cellular mRNA Nuclear ExportR01AI154635 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Beatriz MA Fontoura · 2020 to 2026
$5.1M
Mechanisms and Regulation of Nuclear mRNA ExportR35GM133743 · NIGMS · VANDERBILT UNIVERSITY · PI Yi Ren · 2019 to 2026
$3.6M
mRNA Nuclear Export Machinery as Target of SARS-CoV-2 Nsp1 ProteinR01AI184975 · NIAID · VANDERBILT UNIVERSITY · PI Beatriz MA Fontoura, Adolfo Garcia-Sastre · 2024 to 2026
$2.5M
Thermo Scientific Glacios cryo-TEMS10OD030292 · OD · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2021 to 2021
$2.0M
Intramural NIH HHS ZIA HD008954NCI NIH HHS T32 CA119925NIAID NIH HHS R01 AI125524NIAID NIH HHS R01 AI154635NIAID NIH HHS R01 AI184975NIGMS NIH HHS R35 GM133743NIH HHS S10 OD030292
6 · The paper itself

Abstract

mRNAs are packaged with proteins into messenger ribonucleoprotein complexes (mRNPs) in the nucleus. mRNP assembly and export are of fundamental importance for all eukaryotic gene expression. Before export to the cytoplasm, mRNPs undergo dynamic remodeling governed by the DEAD-box helicase DDX39B (yeast Sub2). DDX39B/Sub2 primarily functions in the nucleus and leaves the mRNP prior to export through the nuclear pore complex; however, the underlying mechanisms remain elusive. Here, we identify the conserved TREX-2 complex as the long-sought factor that facilitates DDX39B/Sub2 to complete the mRNP remodeling cycle. Our crystallographic and cryoelectron microscopy (cryo-EM) analyses demonstrate that TREX-2 modulates the activities of DDX39B/Sub2 through multiple interactions. Critically, a conserved "trigger loop" from TREX-2 splits the two RecA domains of DDX39B/Sub2 and promotes the removal of DDX39B/Sub2 from mRNP. Our findings suggest that TREX-2 coordinates with DDX39B/Sub2 and the human export receptor NXF1-NXT1 (yeast Mex67-Mtr2) to complete the final steps of nuclear mRNP assembly.

Indexed as

DEAD-box RNA HelicasesRibonucleoproteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell NucleusCryoelectron MicroscopyCrystallography, X-RayHumansModels, MolecularProtein BindingDEAD-box RNA Helicasesmessenger ribonucleoproteinRibonucleoproteinsSaccharomyces cerevisiae ProteinsDDX39BDEAD-box ATPaseGANPmRNA nuclear exportmRNP remodelingR-loopSub2TREXTREX-2UAP56

Identifiers

PMID39862860
PMCPMC11890942

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.