Evidence map›Paper›PMID 39859450›Full record

ArticleInternational journal of molecular sciences2025

Structure-Function Relationship of the β-Hairpin of

Beatriz Miranda-Zaragoza, Guillermo A Huerta-Miranda, Wendy I García-García, Elizabeth Hernández-Álvarez, Alejandro Solano-Peralta, Jaeyong Lee, Natalie Strynadka, Margarita Miranda-Hernández, Claudia Rodríguez-Almazán

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Beatriz Miranda-ZaragozaDepartamento de Micro y Nanotecnologías, Instituto de Ciencias Aplicadas y Tecnología, Universidad Nacional Autónoma de México, Cto. Exterior S/N, C.U., Coyoacán, Ciudad de México C.P. 04510, Mexico.ORCID 0009-0001-6413-8207
Guillermo A Huerta-MirandaInstituto de Energías Renovables, Universidad Nacional Autónoma de México, Priv. Xochicalco, Temixco C.P. 62580, Mexico.ORCID 0000-0003-1183-3668
Wendy I García-GarcíaInstituto de Energías Renovables, Universidad Nacional Autónoma de México, Priv. Xochicalco, Temixco C.P. 62580, Mexico.ORCID 0000-0001-6503-4103
Elizabeth Hernández-ÁlvarezInstituto de Geofísica, Universidad Nacional Autónoma de México, Ciudad Universitaria, Ciudad de México C.P. 04510, Mexico.
Alejandro Solano-PeraltaFacultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, Ciudad de México C.P. 04510, Mexico.ORCID 0000-0001-9158-423X
Jaeyong LeeDepartment of Biochemistry and Molecular Biology and Centre for Blood Research, The University of British Columbia, Vancouver, BC V6T 1Z3, Canada.ORCID 0000-0003-3229-2397
Natalie StrynadkaDepartment of Biochemistry and Molecular Biology and Centre for Blood Research, The University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Margarita Miranda-HernándezInstituto de Energías Renovables, Universidad Nacional Autónoma de México, Priv. Xochicalco, Temixco C.P. 62580, Mexico.ORCID 0000-0002-6769-4102
Claudia Rodríguez-AlmazánDepartamento de Micro y Nanotecnologías, Instituto de Ciencias Aplicadas y Tecnología, Universidad Nacional Autónoma de México, Cto. Exterior S/N, C.U., Coyoacán, Ciudad de México C.P. 04510, Mexico.ORCID 0000-0002-8586-2317

Funding

Canadian Institutes of Health Research to N.C.J.S. N.C.J.S. is Tier I Canada Research Chair. Canada Foundation for Innovation (CFI), the Natural Sciences and Engineering Research Council (NSERC), the National Research Council (NRC), the Canadian Institutes of Health Research (CIHR), the Government of Saskatchewan, and the University of SaskatchewPROGRAMA DE APOYO A PROYECTOS DE INVESTIGACIÓN E INNOVACIÓN TECNOLÓGICA, UNIVERSIDAD NACIONAL ATUONOMA DE MEXICO IT201522
6 · The paper itself

Abstract

Thermus thermophilus HB27 laccase (Tth-Lac) is a thermostable enzyme that contains a β-hairpin (Ala292-Gln307) covering the substrate entrance. We analyzed the role of this β-hairpin in the enzymatic activity of Tth-Lac through three β-hairpin mutants: two variants without the β-hairpin (C1Tth-Lac and C2Tth-Lac) and one with a partially modified β-hairpin (P1Tth-Lac). Enzymatic activity was assayed with different substrates with and without copper. C1Tth-Lac showed a higher dependency on copper, increasing its activity by 1600-fold for syringaldazine (SGZ). All mutants presented a higher activity than Tth-Lac with phenolic substrates in the presence of copper. The position of the signal associated with CuT2 also changed, as shown in EPR spectra. Elucidation of the crystal structure of P1Tth-Lac mutant (PDB: 9CPM) showed that the partial deletion of the β-hairpin did not significantly affect the overall tertiary structure compared to the wild-type (PDB: 2xu9) nor the coordination of the four internally bound Cu atoms. Higher B-factors of the residues downstream of the deletion indicate increased flexibility (Q307, G308, P309, S310) that were otherwise more ordered in the Tth-Lac structure. Redox potential experiments on platinum electrodes have shown that all proteins have high redox potential, a finding that could have significant implications in the field of protein research.

Indexed as

Bacterial ProteinsLaccaseThermus thermophilusCopperCrystallography, X-RayModels, MolecularMutationStructure-Activity RelationshipSubstrate SpecificityBacterial ProteinsCopperLaccaseextremozymelaccaseThermus thermophilusβ-hairpin

Identifiers

PMID39859450
PMCPMC11766367

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.