Evidence map›Paper›PMID 39858809›Full record

ArticleMicroorganisms2024

A Comparison of Rice Root Microbial Dynamics in Organic and Conventional Paddy Fields.

Fangming Zhu, Takehiro Kamiya, Toru Fujiwara, Masayoshi Hashimoto, Siyu Gong, Jindong Wu, Hiromi Nakanishi, Masaru Fujimoto

Abstract read
In one paragraph

Article in Microorganisms, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. The synergistic effect between sodium selenite and Pediococcus acidilactici on fermentation quality and aerobic stability of alfalfa silage.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fangming ZhuDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Takehiro KamiyaDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Toru FujiwaraDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Masayoshi HashimotoDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Siyu GongDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.ORCID 0000-0003-4541-9051
Jindong WuDepartment of Global Agricultural Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Hiromi NakanishiDepartment of Global Agricultural Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.ORCID 0000-0001-5556-5058
Masaru FujimotoDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.

Funding

Japan Science and Technology Agency (JST) SPRING JPMJSP2108Japan Society for the Promotion of Science (JSPS) KAKENHI 19KT0033Japan Society for the Promotion of Science (JSPS) KAKENHI 20H00418Japan Society for the Promotion of Science (JSPS) KAKENHI 20K05955Japan Society for the Promotion of Science (JSPS) KAKENHI 23K18023Japan Society for the Promotion of Science (JSPS) KAKENHI 23KJ0514Japan Society for the Promotion of Science (JSPS) KAKENHI 24H00509Japan Society for the Promotion of Science (JSPS) KAKENHI 24K01892
6 · The paper itself

Abstract

The assembly of plant root microbiomes is a dynamic process. Understanding the roles of root-associated microbiomes in rice development requires dissecting their assembly throughout the rice life cycle under diverse environments and exploring correlations with soil properties and rice physiology. In this study, we performed amplicon sequencing targeting fungal ITS and the bacterial 16S rRNA gene to characterize and compare bacterial and fungal community dynamics of the rice root endosphere and soil in organic and conventional paddy fields. Our analysis revealed that root microbial diversity and composition was significantly influenced by agricultural practices and rice developmental stages (

Indexed as

amplicon sequencingdevelopmental stagediversity analysisorganic and conventional paddiesriceroot-associated microbiome

Identifiers

PMID39858809
PMCPMC11768080

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.