Evidence map›Paper›PMID 39858556›Full record

ArticleGenes2024

Determination of Stable Reference Genes for Gene Expression Analysis in Black Rockfish (

Xiatian Chen, Yujie Yu, Tao Gao, Zhifei Liu, Shuaiyu Chen, Yudong Jia

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Primary Culture and Characterization of a Crucian Carp (Animals : an open access journal from MDPI · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiatian ChenYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Yujie YuYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Tao GaoYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Zhifei LiuYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Shuaiyu ChenYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Yudong JiaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.

Funding

Central Public-interest Scientific Institution Basal Research Fund, CAFS 2023TD81Qingdao Postdoctoral Science Foundation under Grant QDBSH20240102012
6 · The paper itself

Abstract

backgroundHypoxia triggers stress, leading to significant alterations in gene expression patterns, which in turn affect fish's growth and development. Real-time quantitative PCR (RT-qPCR) is a pivotal technique for assessing changes in gene expression. However, its accuracy is highly contingent upon the stable expression of reference genes.

methodsThe expression of genes was detected by RT-qPCR and the stability was assessed by Delta Ct, geNorm, NormFinder, and BestKeeper algorithms.

resultsResults showed that

conclusionsThe identified reference genes exhibited tissue-specific stability, and it was necessary to select appropriate reference genes based on the specific tissue type for gene expression studies under hypoxic conditions. These findings help in enhancing the accuracy of gene expression analysis in the mechanism of hypoxia for black rockfish.

Indexed as

FishesFish ProteinsGene Expression ProfilingHypoxiaPerciformesStress, PhysiologicalActinsAnimalsGillsPeptide Elongation Factor 1Real-Time Polymerase Chain ReactionReference StandardsRibosomal ProteinsTubulinActinsFish ProteinsPeptide Elongation Factor 1Ribosomal ProteinsTubulindissolved oxygenfishreference geneRT-qPCRstability

Identifiers

PMID39858556
PMCPMC11764770

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.