Evidence map›Paper›PMID 39856218›Full record

ArticleNature genetics2025

Integrative proteogenomic analysis identifies COL6A3-derived endotrophin as a mediator of the effect of obesity on coronary artery disease.

Satoshi Yoshiji, Tianyuan Lu, Guillaume Butler-Laporte, Julia Carrasco-Zanini-Sanchez, Chen-Yang Su, Yiheng Chen, Kevin Liang, Julian Daniel Sunday Willett, Shidong Wang, Darin Adra and 19 more

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  4. Endotrophin Measured by PRO-C6 as a Prognostic Biomarker for Liver-Related Events in Patients With Advanced Chronic Liver Disease.Liver international : official journal of the International Association for the Study of the Liver · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Satoshi YoshijiDepartment of Human Genetics, McGill University, Montréal, Québec, Canada. satoshi.yoshiji@mcgill.ca.ORCID 0000-0001-8863-2413
Tianyuan LuLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-5664-5698
Guillaume Butler-LaporteLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID 0000-0001-5388-0396
Julia Carrasco-Zanini-SanchezMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.ORCID 0000-0002-3988-7505
Chen-Yang SuLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID 0000-0001-6071-4660
Yiheng ChenDepartment of Human Genetics, McGill University, Montréal, Québec, Canada.
Kevin LiangLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Julian Daniel Sunday WillettLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-8103-0329
Shidong WangSomaLogic, Boulder, CO, USA.
Darin AdraLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Yann IlboudoLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Takayoshi SasakoLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Satoshi KoyamaProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-9286-0360
Tetsushi NakaoProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-9979-2682
Vincenzo Forgetta5 Prime Sciences, Montréal, Québec, Canada.
Yossi FarjounLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Hugo ZebergDepartment of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-7118-1249
Sirui ZhouDepartment of Human Genetics, McGill University, Montréal, Québec, Canada.ORCID 0000-0003-4963-0815
Michael Marks-HultströmLady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID 0000-0003-4675-1099
Mitchell J MachielaDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD, USA.ORCID 0000-0001-6538-9705
Rama KaaliaType 2 Diabetes Systems Genomics Initiative, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-1305-0774
Hesam DashtiType 2 Diabetes Systems Genomics Initiative, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Melina ClaussnitzerType 2 Diabetes Systems Genomics Initiative, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0003-2450-736X
Jason FlannickPrograms in Metabolism and Medical & Population Genetics, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-3618-795X
Nicholas J WarehamMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
Vincent MooserDepartment of Human Genetics, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-8632-0448
Nicholas J TimpsonIntegrative Epidemiology Unit, University of Bristol, Bristol, UK.ORCID 0000-0002-7141-9189
Claudia LangenbergMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.ORCID 0000-0002-5017-7344
J Brent RichardsDepartment of Human Genetics, McGill University, Montréal, Québec, Canada. brent.richards@mcgill.ca.ORCID 0000-0002-3746-9086

Funding

The next iteration of the AMP-T2D Knowledge PortalUM1DK105554 · NIDDK · BROAD INSTITUTE, INC. · PI BOEHNKE, MICHAEL L, BURTT, NOEL P · 2020 to 2025
$18.5M
In vivo and in vitro rare coding variant analyses to identify modulations of the adipocyte differentiation pathway that affect T2D riskR01DK125490 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI Jason Flannick · 2020 to 2026
$3.9M
Whole genome sequence interpretation for lipids to discover new genes and mechanisms for coronary artery diseaseK99HL169733 · NHLBI · BROAD INSTITUTE, INC. · PI KOYAMA, SATOSHI · 2023 to 2024
$330k
Gouvernement du Canada | Instituts de Recherche en Santé du Canada | CIHR Skin Research Training Centre (Skin Research Training Centre) 100558Gouvernement du Canada | Instituts de Recherche en Santé du Canada | CIHR Skin Research Training Centre (Skin Research Training Centre) 169303Gouvernement du Canada | Instituts de Recherche en Santé du Canada | CIHR Skin Research Training Centre (Skin Research Training Centre) 365825Gouvernement du Canada | Instituts de Recherche en Santé du Canada | CIHR Skin Research Training Centre (Skin Research Training Centre) 409511MEXT | Japan Society for the Promotion of Science (JSPS) 202460267NHLBI NIH HHS K99 HL169733NIDDK NIH HHS R01 DK125490NIDDK NIH HHS UM1 DK105554Wellcome Trust
6 · The paper itself

Abstract

Obesity strongly increases the risk of cardiometabolic diseases, yet the underlying mediators of this relationship are not fully understood. Given that obesity strongly influences circulating protein levels, we investigated proteins mediating the effects of obesity on coronary artery disease, stroke and type 2 diabetes. By integrating two-step proteome-wide Mendelian randomization, colocalization, epigenomics and single-cell RNA sequencing, we identified five mediators and prioritized collagen type VI α3 (COL6A3). COL6A3 levels were strongly increased by body mass index and increased coronary artery disease risk. Notably, the carboxyl terminus product of COL6A3, endotrophin, drove this effect. COL6A3 was highly expressed in disease-relevant cell types and tissues. Finally, we found that body fat reduction could reduce plasma levels of COL6A3-derived endotrophin, indicating a tractable way to modify endotrophin levels. In summary, we provide actionable insights into how circulating proteins mediate the effects of obesity on cardiometabolic diseases and prioritize endotrophin as a potential therapeutic target.

Indexed as

Collagen Type VICoronary Artery DiseaseObesityPeptide FragmentsPeptide HormonesProteogenomicsBody Mass IndexDiabetes Mellitus, Type 2FemaleHumansMaleMendelian Randomization AnalysisCOL6A3 protein, humanCollagen Type VIendotrophinPeptide FragmentsPeptide Hormones

Identifiers

PMID39856218
PMCPMC11821532

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.