Evidence map›Paper›PMID 39854234›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Structure-guided engineering of a mutation-tolerant inhibitor peptide against variable SARS-CoV-2 spikes.

Shun Nakamura, Yukihiro Tanimura, Risa Nomura, Hiroshi Suzuki, Kouki Nishikawa, Akiko Kamegawa, Nobutaka Numoto, Atsushi Tanaka, Shigeru Kawabata, Shoichi Sakaguchi and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Shun NakamuraCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.ORCID 0000-0003-2253-6976
Yukihiro TanimuraCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.
Risa NomuraCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.
Hiroshi SuzukiCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.
Kouki NishikawaCeSPIA Inc., Taisei Otemachi, Chiyoda-ku, Tokyo 100-0004, Japan.
Akiko KamegawaCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.ORCID 0000-0001-9436-5884
Nobutaka NumotoInternational Center for Structural Biology, Research Institute for Interdisciplinary Science, Okayama University, Kita-ku, Okayama 700-8530, Japan.ORCID 0000-0001-6113-9792
Atsushi TanakaDivision of Research Animal Laboratory and Translational Medicine, Research and Development Center, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka 569-8686, Japan.ORCID 0000-0002-1424-807X
Shigeru KawabataDepartment of Pathology, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka 569-8686, Japan.ORCID 0000-0003-3948-4500
Shoichi SakaguchiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka 569-8686, Japan.ORCID 0000-0003-3650-1221
Akino EmiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka 569-8686, Japan.
Youichi SuzukiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka 569-8686, Japan.ORCID 0000-0003-3554-0755
Yoshinori FujiyoshiCellular and Structural Physiology Laboratory, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, Bunkyo-ku, Tokyo 113-8510, Japan.

Funding

Grants-in-Aid for Scientific Research (A) 20H00451Japan Agency for Medical Research and Development (AMED) JP18ae0101046Japan Agency for Medical Research and Development (AMED) JP21ae0121028Japan Agency for Medical Research and Development (AMED) JP21fk0108462Japan Agency for Medical Research and Development (AMED) JP21fk0108585
6 · The paper itself

Abstract

Pathogen mutations present an inevitable and challenging problem for therapeutics and the development of mutation-tolerant anti-infective drugs to strengthen global health and combat evolving pathogens is urgently needed. While spike proteins on viral surfaces are attractive targets for preventing viral entry, they mutate frequently, making it difficult to develop effective therapeutics. Here, we used a structure-guided strategy to engineer an inhibitor peptide against the SARS-CoV-2 spike, called CeSPIACE, with mutation-tolerant and potent binding ability against all variants to enhance affinity for the invariant architecture of the receptor-binding domain (RBD). High-resolution structures of the peptide complexed with mutant RBDs revealed a mechanism of mutation-tolerant inhibition. CeSPIACE bound major mutant RBDs with picomolar affinity and inhibited infection by SARS-CoV-2 variants in VeroE6/TMPRSS2 cells (IC

Indexed as

Antiviral AgentsCOVID-19 Drug TreatmentPeptidesSARS-CoV-2Spike Glycoprotein, CoronavirusAnimalsChlorocebus aethiopsCOVID-19CricetinaeHumansMutationProtein EngineeringVero CellsVirus InternalizationAntiviral AgentsPeptidesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2peptide engineeringSARS-CoV-2spikestructural biology

Identifiers

PMID39854234
PMCPMC11789008

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.