Evidence map›Paper›PMID 39853118›Full record

ArticlemBio2025

Interplay between the cyclophilin homology domain of RANBP2 and MX2 regulates HIV-1 capsid dependencies on nucleoporins.

Haley Flick, Ananya Venbakkam, Parmit K Singh, Bailey Layish, Szu-Wei Huang, Rajalingam Radhakrishnan, Mamuka Kvaratskhelia, Alan N Engelman, Melissa Kane

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haley Flick *Department of Pediatrics, Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Ananya Venbakkam *Department of Pediatrics, Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-8511-9806
Parmit K SinghDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Bailey LayishDepartment of Pediatrics, Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Szu-Wei HuangDivision of Infectious Diseases, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Rajalingam RadhakrishnanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Mamuka KvaratskheliaDivision of Infectious Diseases, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0003-3800-0033
Alan N EngelmanPittsburgh Center for HIV Protein Interactions, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-9709-2591
Melissa KaneDepartment of Pediatrics, Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-4580-1210

Funding

Project 3. IntegrationU54AI170791 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ANGELA M. GRONENBORN · 2022 to 2026
$30.6M
Nuclear Localization of HIV-1 Preintegration ComplexesR01AI052014 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ENGELMAN, ALAN N. · 2003 to 2025
$11.4M
Functionally Defining HIV-Host Interactions During the Early HIV-1 LifecycleR01AI150998 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BIENIASZ, PAUL D., HOPE, THOMAS · 2020 to 2024
$6.8M
Roles of HIV-1 capsid-binding FG-motif containing cellular cofactors in infectionR01AI162665 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Mamuka Kvaratskhelia, Gregory B Melikian · 2022 to 2026
$3.9M
Inhibition of lentiviral nuclear import pathways by Mx2R01AI162172 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KANE, MELISSA E · 2021 to 2025
$2.0M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI052014HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI1621172, R01AI150988HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI162665HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U54AI170791NIAID NIH HHS R01 AI052014NIAID NIH HHS R01 AI150998NIAID NIH HHS R01 AI162172NIAID NIH HHS R01 AI162665NIAID NIH HHS U54 AI170791
6 · The paper itself

Abstract

Interlinked interactions between the viral capsid (CA), nucleoporins (Nups), and the antiviral protein myxovirus resistance 2 (MX2/MXB) influence human immunodeficiency virus 1 (HIV-1) nuclear entry and the outcome of infection. Although RANBP2/NUP358 has been repeatedly identified as a critical player in HIV-1 nuclear import and MX2 activity, the mechanism by which RANBP2 facilitates HIV-1 infection is not well understood. To explore the interactions between MX2, the viral CA, and RANBP2, we utilized CRISPR-Cas9 to generate cell lines expressing RANBP2 from its endogenous locus but lacking the C-terminal cyclophilin (Cyp) homology domain and found that both HIV-1 and HIV-2 infections were reduced significantly in RANBP2 IMPORTANCE: Human immunodeficiency virus 1 (HIV-1) entry into the nucleus is an essential step in viral replication that involves complex interactions between the viral capsid (CA) and multiple cellular proteins, including nucleoporins (Nups) such as RANBP2. Nups also mediate the function of the antiviral protein myxovirus resistance 2 (MX2); however, determining the precise role of Nups in HIV infection has proved challenging due to the complex nature of the nuclear pore complex (NPC) and significant pleiotropic effects elicited by Nup depletion. We have used precise gene editing to assess the role of the cyclophilin domain of RANBP2 in HIV-1 infection and MX2 activity. We find that this domain affects viral infection, nucleoporin requirements, MX2 sensitivity, and integration targeting in a CA-specific manner, providing detailed insights into how RANBP2 contributes to HIV-1 infection.

Indexed as

CapsidCapsid ProteinsCyclophilinsHIV-1Molecular ChaperonesMyxovirus Resistance ProteinsNuclear Pore Complex ProteinsActive Transport, Cell NucleusCell LineCRISPR-Cas SystemsHEK293 CellsHIV InfectionsHumansProtein DomainsVirus ReplicationCapsid ProteinsCyclophilinsMolecular ChaperonesMX2 protein, humanMyxovirus Resistance ProteinsNuclear Pore Complex Proteinsran-binding protein 2cyclophilinHIV-1 capsidMX2RANBP2

Identifiers

PMID39853118
PMCPMC11898759

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.