Evidence map›Paper›PMID 39853105›Full record

ArticleMicrobiology resource announcements2025

Kalamari: a representative set of genomes of public health concern.

Lee S Katz, Taylor Griswold, Rebecca L Lindsey, A C Lauer, Monica S Im, Grant Williams, Jessica L Halpin, Gerardo A Gómez, Zuzana Kucerova, Shatavia Morrison and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lee S KatzDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-2533-9161
Taylor GriswoldDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0001-9084-7958
Rebecca L LindseyDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-2149-7971
A C LauerDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-2924-758X
Monica S ImDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-4292-7598
Grant WilliamsDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-6033-485X
Jessica L HalpinDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0003-4108-7010
Gerardo A GómezDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-1800-8321
Zuzana KucerovaDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-7080-5715
Shatavia MorrisonDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-4658-5951
Andrew PageTheiagen Genomics, Highlands Ranch, Colorado, USA.ORCID 0000-0001-6919-6062
Henk C Den BakkerCenter for Food Safety, University of Georgia (UGA), Griffin, Georgia, USA.ORCID 0000-0002-4086-1580
Heather A CarletonDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA.ORCID 0000-0002-1017-8895

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kalamari is a resource that supports genomic epidemiology and pathogen surveillance. It consists of representative genomes and common contaminants. Kalamari also contains a custom taxonomy and software for downloading and formatting the data.

Indexed as

bioinformaticsgenomicsphylogenomicspublic healthtaxonomy

Identifiers

PMID39853105
PMCPMC11812380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.