Evidence map›Paper›PMID 39850547›Full record

ArticleImaging neuroscience (Cambridge, Mass.)2024

Synthetic data in generalizable, learning-based neuroimaging.

Karthik Gopinath, Andrew Hoopes, Daniel C Alexander, Steven E Arnold, Yael Balbastre, Benjamin Billot, Adrià Casamitjana, You Cheng, Russ Yue Zhi Chua, Brian L Edlow and 17 more

Abstract read
In one paragraph

Article in Imaging neuroscience (Cambridge, Mass.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Brain-age in ultra-low-field MRI: How well does it work?Imaging neuroscience (Cambridge, Mass.) · 2026
    Article
  9. Deep infant brain segmentation from multi-contrast MRI.Conference record. Asilomar Conference on Signals, Systems & Computers · 2025
    Article
  10. Article
  11. Article
  12. MultiMorph: On-demand Atlas Construction.Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2025
    Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Karthik GopinathMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Andrew HoopesMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Daniel C AlexanderUniversity College London, London, England.
Steven E ArnoldMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Yael BalbastreMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Benjamin BillotComputer Science & Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, United States.
Adrià CasamitjanaUniversitat de Girona, Girona, Spain.
You ChengMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Russ Yue Zhi ChuaMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Brian L EdlowMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Bruce FischlMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Harshvardhan GazulaMassachusetts Institute of Technology, Cambridge, MA, United States.
Malte HoffmannMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
C Dirk KeeneUniversity of Washington, Seattle, WA, United States.
Seunghoi KimUniversity College London, London, England.
W Taylor KimberlyMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Sonia LagunaETH Zürich, Zürich, Switzerland.
Kathleen E LarsonMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Koen Van LeemputMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Oula PuontiMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Livia M RodriguesMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Matthew S RosenMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Henry F J TregidgoUniversity College London, London, England.
Divya VaradarajanMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Sean I YoungMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Adrian V DalcaMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Juan Eugenio IglesiasMassachusetts General Hospital, Harvard Medical School, Boston, MA, United States.

Funding

Functionally guided adult whole brain cell atlas in human and NHPUM1MH130981 · NIMH · ALLEN INSTITUTE · PI Ed Lein, Hongkui Zeng · 2022 to 2026
$91.9M
Topographic, cell type and molecular pathway characterization ofAlzheimer's disease using single cell transcriptomics and epigenomicsU19AG060909 · NIA · ALLEN INSTITUTE · PI CHRISTOPHER DIRK KEENE · 2020 to 2026
$83.6M
Translational pharmacoepidemiology: neuroprotection and neurotoxicity of antihypertensives and strong anticholinergicsU19AG066567 · NIA · KAISER FOUNDATION RESEARCH INSTITUTE · PI Christine L MacDonald · 2021 to 2026
$80.4M
University of Washington Alzheimer's Disease Research CenterP30AG066509 · NIA · UNIVERSITY OF WASHINGTON · PI Amanda D. Boyd · 2020 to 2026
$29.0M
VCID Biomarkers Coordinating CenterU24NS100591 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Steven M Greenberg · 2016 to 2026
$19.8M
BRAIN CONNECTS: The center for Large-scale Imaging of Neural Circuits (LINC)UM1NS132358 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Suzanne N Haber, Elizabeth M. C. Hillman · 2023 to 2026
$17.5M
Training and Dissemination CoreP41EB030006 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI Susie Yi Huang, BRUCE R ROSEN · 2020 to 2026
$10.9M
Imaging and Analysis Techniques to Construct a Cell Census Atlas of the Human Brain Admin SupplementU01MH117023 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI BOAS, DAVID A, FISCHL, BRUCE · 2018 to 2022
$7.6M
Neuroimaging and clinical Endpoints With High-dimensional analysis Of Pathological Endophenotypes in TBI (NEW-HOPE-TBI)U01NS137484 · NINDS · UNIVERSITY OF WASHINGTON · PI CHRISTOPHER DIRK KEENE, Christine L MacDonald · 2024 to 2026
$6.3M
An Acquisition and Analysis Pipeline for Integrating MRI and Neuropathology in TBI-related Dementia and VCIDU24NS135561 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Bruce Fischl, Susie Yi Huang · 2023 to 2026
$6.1M
FreeSurfer Development, Maintenance, and HardeningR01EB023281 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI Bruce Fischl, Douglas Nowlin Greve · 2016 to 2026
$5.6M
A Longitudinal Analysis Stream for FreeSurferR01NS083534 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Bruce Fischl · 2014 to 2026
$4.6M
NIA NIH HHS K99 AG081493NIA NIH HHS P30 AG066509NIA NIH HHS R01 AG064027NIA NIH HHS R01 AG070988NIA NIH HHS R21 AG082082NIA NIH HHS RF1 AG080371NIA NIH HHS U19 AG060909NIA NIH HHS U19 AG066567NIBIB NIH HHS P41 EB030006NIBIB NIH HHS R01 EB023281NIBIB NIH HHS R01 EB031114NIBIB NIH HHS R01 EB033773NICHD NIH HHS R00 HD101553NIMH NIH HHS RF1 MH121885NIMH NIH HHS RF1 MH123195NIMH NIH HHS U01 MH117023NIMH NIH HHS UM1 MH130981NINDS NIH HHS R01 NS083534NINDS NIH HHS R01 NS105820NINDS NIH HHS U01 NS132181NINDS NIH HHS U01 NS137484NINDS NIH HHS U24 NS100591NINDS NIH HHS U24 NS135561NINDS NIH HHS UM1 NS132358Wellcome Trust
6 · The paper itself

Abstract

Synthetic data have emerged as an attractive option for developing machine-learning methods in human neuroimaging, particularly in magnetic resonance imaging (MRI)-a modality where image contrast depends enormously on acquisition hardware and parameters. This retrospective paper reviews a family of recently proposed methods, based on synthetic data, for generalizable machine learning in brain MRI analysis. Central to this framework is the concept of domain randomization, which involves training neural networks on a vastly diverse array of synthetically generated images with random contrast properties. This technique has enabled robust, adaptable models that are capable of handling diverse MRI contrasts, resolutions, and pathologies, while working out-of-the-box, without retraining. We have successfully applied this method to tasks such as whole-brain segmentation (SynthSeg), skull-stripping (SynthStrip), registration (SynthMorph, EasyReg), super-resolution, and MR contrast transfer (SynthSR). Beyond these applications, the paper discusses other possible use cases and future work in our methodology. Neural networks trained with synthetic data enable the analysis of clinical MRI, including large retrospective datasets, while greatly alleviating (and sometimes eliminating) the need for substantial labeled datasets, and offer enormous potential as robust tools to address various research goals.

Indexed as

EasyRegSynthMorphSynthSegSynthSRSynthStrip

Identifiers

PMID39850547
PMCPMC11752692

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.