Evidence map›Paper›PMID 39850508›Full record

ArticleGigaByte (Hong Kong, China)2025

Biodepot Launcher: an app to install, manage and launch bioinformatics workflows.

Ling-Hong Hung, Thomas J Dahlstrom, Johnalbert Garnica, Emmanuel Munoz, Robert Schmitz, Ka Yee Yeung

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in GigaByte (Hong Kong, China), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ling-Hong HungSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.ORCID https://orcid.org/0000-0002-5209-2248
Thomas J DahlstromSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.ORCID https://orcid.org/0000-0003-4363-0697
Johnalbert GarnicaSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.ORCID https://orcid.org/0009-0004-6419-1560
Emmanuel MunozBiodepot LLC, Seattle, WA, USA.
Robert SchmitzBiodepot LLC, Seattle, WA, USA.ORCID https://orcid.org/0000-0002-5279-8793
Ka Yee YeungSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.ORCID https://orcid.org/0000-0002-1754-7577

Funding

MorPhiC Data Resource and Administrative Coordinating CenterU24HG012674 · NHGRI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Helen Elizabeth Parkinson, Stephan C Schurer · 2022 to 2026
$6.9M
Rapid Acute Leukemia Genomic Profiling with CRISPR enrichment and Real-time long-read sequencingR21CA280520 · NCI · FRED HUTCHINSON CANCER CENTER · PI YEUNG, CECILIA C · 2023 to 2024
$687k
"HIGH THROUGHPUT SPATIALOMICS PROFILING FOR THICK TUMOR TISSUES"75N91021C00022 · NCI · BIODEPOT LLC · PI HOANG, VARIK · 2021 to 2021
$399k
Integrative and interactive analyses of host transcriptional response to COVID-19 and other respiratory viral infectionsR03AI159286 · NIAID · UNIVERSITY OF WASHINGTON · PI YEUNG-RHEE, KA YEE · 2022 to 2023
$155k
NCI NIH HHS 75N91021C00022NCI NIH HHS R21 CA280520NHGRI NIH HHS U24 HG012674NIAID NIH HHS R03 AI159286
6 · The paper itself

Abstract

We present the Biodepot Launcher, a desktop application that facilitates installation, management and deployment of bioinformatics workflows using the Biodepot-workflow-builder (Bwb). With the new app, Bwb can be started by double-clicking on an icon, eliminating the need for typing cryptic start up commands into the terminal. This creates an end-to-end graphical and easy-to-use interface to manage and launch containerized workflows on the local computer or cloud instances. Biodepot Launcher is written in React and Javascript, and uses the node.js framework Neutralinojs and web browser routines to allow the application to execute on Linux, Windows and Mac desktop environments.

Identifiers

PMID39850508
PMCPMC11751628

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.