Evidence map›Paper›PMID 39849192›Full record

ArticleGenes & genomics2025

Genome-wide analysis of TCP family genes and their constitutive expression pattern analysis in the melon (Cucumis melo).

Md Jahid Hasan Jone, Md Nure Adil Siddique, Manosh Kumar Biswas, Mohammad Rashed Hossain

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Article in Genes & genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 authors.

Md Jahid Hasan JonePlant Molecular Breeding and Bioinformatics Laboratory, Department of Genetics and Plant Breeding, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.ORCID 0000-0003-1219-6939
Md Nure Adil SiddiquePlant Molecular Breeding and Bioinformatics Laboratory, Department of Genetics and Plant Breeding, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.ORCID 0009-0003-9270-7811
Manosh Kumar BiswasDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Mohammad Rashed HossainPlant Molecular Breeding and Bioinformatics Laboratory, Department of Genetics and Plant Breeding, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh. m.r.hossain@bau.edu.bd.ORCID 0000-0002-3485-9855

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6 · The paper itself

Abstract

backgroundTCP proteins are plant-specific transcription factors that play essential roles in various developmental processes, including leaf morphogenesis and senescence, flowering, lateral branching, hormone crosstalk, and stress responses. However, a comprehensive analysis of genome-wide TCP genes and their expression patterns in melon is yet to be done.

objectiveThe present study aims to identify and analyze the TCP genes in the melon genome and understand their putative functions.

methodsThe chromosomal location, gene structure, conserved motifs, protein domains, structural homology, cis-regulating elements, transcript expression patterns, and potential protein-protein interactions were analyzed using various databases and webtools.

resultsA total of 29 putative TCP genes are identified in melon. These genes were classified into two classes: Class-I (13 genes) and Class-II (16 genes). The results revealed that the putative CmTCP genes are distributed across nine of the twelve melon chromosomes and exhibit diverse expression patterns in different tissues which mostly indicates their potential role in floral organ development, lateral branching, growth and development. Phylogenetic analysis suggests that some CmTCP genes may have similar functions to their homologs in other plant species, while others may have undergone functional diversification.

conclusionThis study paves the way for future investigations into the specific roles of individual CmTCP genes in melon and for elucidating the mechanisms by which TCP proteins regulate leaf elongation, floral development, and lateral branching.

Indexed as

Cucumis meloPlant ProteinsTranscription FactorsChromosomes, PlantGene Expression Regulation, PlantGenome, PlantMultigene FamilyPhylogenyPlant ProteinsTranscription FactorsCucumis meloExpression patternGenome-wideTCPTranscription factors

Identifiers

PMID39849192

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