Evidence map›Paper›PMID 39848958›Full record

ArticleScientific reports2025

Microbiome analysis in individuals with human papillomavirus oral infection.

David Israel Escobar Marcillo, Grete Francesca Privitera, Francesca Rollo, Alessandra Latini, Eugenia Giuliani, Maria Benevolo, Massimo Giuliani, Barbara Pichi, Raul Pellini, Maria Gabriella Donà

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

David Israel Escobar Marcillo *Section of Mechanisms, Biomarkers and Models, Department of Environment and Health, Istituto Superiore di Sanità, Rome, Italy.
Grete Francesca Privitera *Bioinformatics Unit, Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy.
Francesca RolloPathology Department, IRCCS Regina Elena National Cancer Institute, Rome, Italy. francesca.rollo@ifo.it.ORCID 0000-0003-2724-872X
Alessandra LatiniSTI/HIV Unit, San Gallicano Dermatological Institute IRCCS, Rome, Italy.
Eugenia GiulianiSTI/HIV Unit, San Gallicano Dermatological Institute IRCCS, Rome, Italy.
Maria BenevoloPathology Department, IRCCS Regina Elena National Cancer Institute, Rome, Italy.
Massimo GiulianiSTI/HIV Unit, San Gallicano Dermatological Institute IRCCS, Rome, Italy.
Barbara PichiOtolaryngology Head Neck Surgery Department, IRCCS Regina Elena National Cancer Institute, Rome, Italy.
Raul PelliniOtolaryngology Head Neck Surgery Department, IRCCS Regina Elena National Cancer Institute, Rome, Italy.
Maria Gabriella DonàSTI/HIV Unit, San Gallicano Dermatological Institute IRCCS, Rome, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbiome gained attention as a cofactor in cancers originating from epithelial tissues. High-risk (hr)HPV infection causes oropharyngeal squamous cell carcinoma but only in a fraction of hrHPV+ individuals, suggesting that other factors play a role in cancer development. We investigated oral microbiome in cancer-free subjects harboring hrHPV oral infection (n = 33) and matched HPV- controls (n = 30). DNA purified from oral rinse-and-gargles of HIV-infected (HIV+) and HIV-uninfected (HIV-) individuals were used for 16S rRNA gene V3-V4 region amplification and sequencing. Analysis of differential microbial abundance and differential pathway abundance was performed, separately for HIV+ and HIV- individuals. Significant differences in alpha (Chao-1 and Shannon indices) and beta diversity (unweighted UniFrac distance) were observed between hrHPV+ and HPV-negative subjects, but only for the HIV- individuals. Infection by hrHPVs was associated with significant changes in the abundance of Saccharibacteria in HIV+ and Gracilibacteria in HIV- subjects. At the genus level, the greatest change in HIV+ individuals was observed for Bulleidia, which was significantly enriched in hrHPV+ subjects. In HIV- individuals, those hrHPV+ showed a significant enrichment of Parvimonas and depletion of Alloscardovia. Our data suggest a possible interplay between hrHPV infection and oral microbiome, which may vary with the HIV status.

Indexed as

MicrobiotaMouthPapillomaviridaePapillomavirus InfectionsAdultFemaleHIV InfectionsHuman Papillomavirus VirusesHumansMaleMiddle AgedRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID39848958
PMCPMC11757712

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.