Evidence map›Paper›PMID 39847558›Full record

ArticlePloS one2025

zIncubascope: Long-term quantitative imaging of multi-cellular assemblies inside an incubator.

Anirban Jana, Naveen Mekhileri, Adeline Boyreau, Aymerick Bazin, Nadège Pujol, Kevin Alessandri, Gaëlle Recher, Pierre Nassoy, Amaury Badon

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anirban JanaLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.
Naveen MekhileriLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.
Adeline BoyreauLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.
Aymerick BazinLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.
Nadège PujolTreefrog Therapeutics, Pessac, France.
Kevin AlessandriTreefrog Therapeutics, Pessac, France.
Gaëlle RecherLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.ORCID 0000-0001-9004-0118
Pierre NassoyLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.
Amaury BadonLP2N, Laboratoire Photonique Numérique et Nanosciences, University Bordeaux, Talence, France.ORCID 0000-0002-1963-0075

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in bioengineering have made it possible to develop increasingly complex biological systems to recapitulate organ functions as closely as possible in vitro. Monitoring the assembly and growth of multi-cellular aggregates, micro-tissues or organoids and extracting quantitative information is a crucial but challenging task required to decipher the underlying morphogenetic mechanisms. We present here an imaging platform designed to be accommodated inside an incubator which provides high-throughput monitoring of cell assemblies over days and weeks. We exemplify the capabilities of our system by investigating human induced pluripotent stem cells (hiPSCs) enclosed in spherical capsules, hiPSCs in tubular capsules and yeast cells in spherical capsules. Combined with a customized pipeline of image analysis, our solution provides insight into the impact of confinement on the morphogenesis of these self-organized systems.

Indexed as

Induced Pluripotent Stem CellsHumansImage Processing, Computer-Assisted

Identifiers

PMID39847558
PMCPMC11756754

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.