Evidence map›Paper›PMID 39845081›Full record

ArticleFrontiers in cell and developmental biology2024

A scATAC-seq atlas of stasis zone in rat skin burn injury wound process.

Ruikang Li, Jiashan Li, Shuai Liu, Xinya Guo, Jianyu Lu, Tao Wang, Junjie Chen, Yue Zheng, Yue Yuan, Jiaxin Du and 11 more

Abstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Ruikang Li *Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, The College of Life Sciences, Northwest University, Xi'an, China.
Jiashan Li *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Shuai Liu *BGI College and Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Zhengzhou, China.
Xinya Guo *Department of Burn Surgery, The First Affiliated Hospital of Naval Medical University, Shanghai, China.
Jianyu LuDepartment of Burn Surgery, The First Affiliated Hospital of Naval Medical University, Shanghai, China.
Tao WangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Junjie ChenBGI Research, Hangzhou, China.
Yue ZhengKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, The College of Life Sciences, Northwest University, Xi'an, China.
Yue YuanBGI Research, Hangzhou, China.
Jiaxin DuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Bolin ZhuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Xiaoyu WeiBGI Research, Hangzhou, China.
Pengcheng GuoBGI Research, Hangzhou, China.
Longqi LiuBGI College and Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Zhengzhou, China.
Xun XuBGI Research, Shenzhen, China.
Xi DaiBGI Research, Hangzhou, China.
Runzhi HuangDepartment of Burn Surgery, The First Affiliated Hospital of Naval Medical University, Shanghai, China.
Xin LiuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Xiaoyan HuDepartment of Burn Surgery, The First Affiliated Hospital of Naval Medical University, Shanghai, China.
Shiwei WangKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, The College of Life Sciences, Northwest University, Xi'an, China.
Shizhao JiDepartment of Burn Surgery, The First Affiliated Hospital of Naval Medical University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Burn injuries often leave behind a "stasis zone", a region of tissue critically important for determining both the severity of the injury and the potential for recovery. To understand the intricate cellular and epigenetic changes occurring within this critical zone, we utilized single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq) to profile over 31,500 cells from both healthy rat skin and the stasis zone at nine different time points after a burn injury. This comprehensive approach revealed 26 distinct cell types and the dynamic shifts in the proportions of these cell types over time. We observed distinct gene activation patterns in different cell types at various stages post-burn, highlighting key players in immune activation, tissue regeneration, and blood vessel repair. Importantly, our analysis uncovered the regulatory networks governing these genes, offering valuable insights into the intricate mechanisms orchestrating burn wound healing. This comprehensive cellular and molecular atlas of the stasis zone provides a powerful resource for developing targeted therapies aimed at improving burn injury recovery and minimizing long-term consequences.

Indexed as

chromatin accessibilityrat burn injuriesstasis zonetranscription factorwound healing

Identifiers

PMID39845081
PMCPMC11752905

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.