Evidence map›Paper›PMID 39843955›Full record

Articlenpj antimicrobials and resistance2024

Genetic mutations in Cryptococcus neoformans pyrimidine salvage pathway enzymes contribute to reduced susceptibility against 5-fluorocytosine.

Fatima Zohra Delma, Dong-Hoon Yang, Alfredo Cabrera-Orefice, Jordy Coolen, Abdullah M S Al-Hatmi, Sarah A Ahmed, Willem J G Melchers, Yun C Chang, Kyung J Kwon-Chung, Sybren de Hoog and 2 more

Abstract read
In one paragraph

Article in npj antimicrobials and resistance, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Genomic Characterization ofVeterinary sciences · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Fatima Zohra DelmaDepartment of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Dong-Hoon YangMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.
Alfredo Cabrera-OreficeCenter for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Centre, Nijmegen, The Netherlands.
Jordy CoolenDepartment of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-0443-6250
Abdullah M S Al-HatmiRadboudumc-CWZ Center of Expertise for Mycology, Radboudumc Community for Infectious Diseases (RCI), Nijmegen, The Netherlands.
Sarah A AhmedRadboudumc-CWZ Center of Expertise for Mycology, Radboudumc Community for Infectious Diseases (RCI), Nijmegen, The Netherlands.
Willem J G MelchersDepartment of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Yun C ChangMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.
Kyung J Kwon-ChungMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.
Sybren de HoogRadboudumc-CWZ Center of Expertise for Mycology, Radboudumc Community for Infectious Diseases (RCI), Nijmegen, The Netherlands.
Paul E VerweijDepartment of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Jochem B BuilDepartment of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands. Jochem.buil@radboudumc.nl.ORCID http://orcid.org/0000-0003-4031-0778

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptococcal meningitis is a high-mortality infection. Adding 5-fluorocytosine (5-FC) to its treatment improves outcomes, but resistance to 5-FC presents a significant challenge. We conducted whole-genome sequencing on seven C. neoformans isolates with varying 5-FC susceptibility, along with proteomic and in silico analyses. Our findings indicate that mutations in genes of the pyrimidine salvage pathway are responsible for 5-FC resistance. Specifically, we identified an E64G missense mutation in the FUR1 gene, a large deletion in the FCY1 gene, and a point mutation in FCY1 leading to a truncated protein. The proteomic data indicated that these mutations resulted in the absence or reduction of crucial enzymes in resistant isolates. Genetic transformations confirmed the association between these mutations and 5-FC resistance. Resistance to 5-FC can develop during treatment and is closely tied to mutations in key metabolic enzymes. Understanding in vivo resistance development is crucial for combating resistance and enhancing patient outcomes.

Identifiers

PMID39843955
PMCPMC11721657

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.