Evidence map›Paper›PMID 39843953›Full record

Articlenpj antimicrobials and resistance2024

Integration of vanHAX downstream of a ribosomal RNA operon restores vancomycin resistance in a susceptible Enterococcus faecium strain.

Ross S McInnes, Ann E Snaith, Steven J Dunn, Maria Papangeli, Katherine J Hardy, Abid Hussain, Willem van Schaik

Abstract read
In one paragraph

Article in npj antimicrobials and resistance, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Antibiotics (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. ISMicrobial genomics · 2025
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ross S McInnesInstitute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0003-3223-6440
Ann E SnaithInstitute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.
Steven J DunnInstitute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0003-1529-6900
Maria PapangeliBiodiscovery Institute, National Biofilms Innovation Centre and School of Life Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.
Katherine J HardyBirmingham Public Health Laboratory, UK Health Security Agency, Birmingham, B9 5SS, UK.
Abid HussainBirmingham Public Health Laboratory, UK Health Security Agency, Birmingham, B9 5SS, UK.ORCID http://orcid.org/0000-0001-9209-1488
Willem van SchaikInstitute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK. w.vanschaik@bham.ac.uk.ORCID http://orcid.org/0000-0001-5832-0988

Funding

RCUK | Medical Research Council (MRC) MR/W031191/1Royal Society WM160092Wellcome Trust (Wellcome) 15154/Z/18/Z
6 · The paper itself

Abstract

During the genomic characterisation of Enterococcus faecium strains (n = 39) collected in a haematology ward, we identified an isolate (OI25), which contained vanA-type vancomycin resistance genes but was phenotypically susceptible to vancomycin. OI25 could revert to resistance when cultured in the presence of vancomycin and was thus considered to be vancomycin-variable. Long-read sequencing was used to identify structural variations within the vancomycin resistance region of OI25 and to uncover its resistance reversion mechanism. We found that OI25 has a reduced ability to positively regulate expression of the vanHAX genes in the presence of vancomycin, which was associated with the insertion of an IS6-family element within the promoter region and the first 50 bp of the vanR gene. The vancomycin-resistant revertant isolates constitutively expressed vanHAX genes at levels up to 36,000-fold greater than OI25 via co-transcription with a ribosomal RNA operon. The vancomycin-resistant revertants did not exhibit a significant growth defect. During VRE outbreaks, attention should be paid to contemporaneous vancomycin-susceptible strains as these may carry silent vancomycin resistance genes that can be activated through genomic rearrangements.

Identifiers

PMID39843953
PMCPMC11702846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.