Evidence map›Paper›PMID 39843904›Full record

ArticleNature communications2025

Mechanism of sensor kinase CitA transmembrane signaling.

Xizhou Cecily Zhang, Kai Xue, Michele Salvi, Benjamin Schomburg, Jonas Mehrens, Karin Giller, Marius Stopp, Siegfried Weisenburger, Daniel Böning, Vahid Sandoghdar and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. ThebioRxiv : the preprint server for biology · 2025
    Article
  3. Pushing Sensitivity and Specificity Limits in Native Structural Biology:Journal of the American Chemical Society · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Xizhou Cecily ZhangNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Kai XueNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0001-7824-5516
Michele SalviNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Benjamin SchomburgNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Jonas MehrensNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Karin GillerNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Marius StoppInstitute for Molecular Physiology (imP), Microbiology and Biotechnology, Johannes Gutenberg University, Mainz, Germany.
Siegfried WeisenburgerDepartment of Physics, Friedrich Alexander University (FAU) Erlangen-Nürnberg, Erlangen, Germany.ORCID http://orcid.org/0000-0003-2044-0372
Daniel BöningDepartment of Physics, Friedrich Alexander University (FAU) Erlangen-Nürnberg, Erlangen, Germany.
Vahid SandoghdarDepartment of Physics, Friedrich Alexander University (FAU) Erlangen-Nürnberg, Erlangen, Germany.ORCID http://orcid.org/0000-0003-2594-4801
Gottfried UndenInstitute for Molecular Physiology (imP), Microbiology and Biotechnology, Johannes Gutenberg University, Mainz, Germany.
Stefan BeckerNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. sabe@mpinat.mpg.de.ORCID http://orcid.org/0000-0003-2041-5740
Loren B AndreasNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. land@mpinat.mpg.de.ORCID http://orcid.org/0000-0003-3216-9065
Christian GriesingerNMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. cigr@mpinat.mpg.de.ORCID http://orcid.org/0000-0002-1266-4344

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) AN1316/1-1Deutsche Forschungsgemeinschaft (German Research Foundation) GR 1211/18-1Deutsche Forschungsgemeinschaft (German Research Foundation) UN 49/21-1Max-Planck-Gesellschaft (Max Planck Society) institutional fundingMax-Planck-Gesellschaft (Max Planck Society) institutional funds
6 · The paper itself

Abstract

Membrane bound histidine kinases (HKs) are ubiquitous sensors of extracellular stimuli in bacteria. However, a uniform structural model is still missing for their transmembrane signaling mechanism. Here, we used solid-state NMR in conjunction with crystallography, solution NMR and distance measurements to investigate the transmembrane signaling mechanism of a paradigmatic citrate sensing membrane embedded HK, CitA. Citrate binding in the sensory extracytoplasmic PAS domain (PASp) causes the linker to transmembrane helix 2 (TM2) to adopt a helical conformation. This triggers a piston-like pulling of TM2 and a quaternary structure rearrangement in the cytosolic PAS domain (PASc). Crystal structures of PASc reveal both anti-parallel and parallel dimer conformations. An anti-parallel to parallel transition upon citrate binding agrees with interdimer distances measured in the lipid embedded protein using a site-specific

Indexed as

Bacterial ProteinsCell MembraneHistidine KinaseProtein KinasesSignal TransductionCitric AcidCrystallography, X-RayMagnetic Resonance SpectroscopyModels, MolecularPhosphorylationProtein BindingProtein ConformationProtein DomainsBacterial ProteinsCitric AcidHistidine KinaseProtein Kinases

Identifiers

PMID39843904
PMCPMC11754779

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.