Evidence map›Paper›PMID 39843470›Full record

ArticleScientific data2025

A high-quality chromosome-scale genome assembly of the Cherokee rose (Rosa laevigata).

Yi Wang, Huijun Yan, Xianqin Qiu, Hao Zhang, Yonghong Zhang, Hongying Jian

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yi WangSchool of Life Sciences, Yunnan Normal University, Kunming, 650500, China.
Huijun YanFlower Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China.
Xianqin QiuFlower Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China.
Hao ZhangFlower Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China.
Yonghong ZhangSchool of Life Sciences, Yunnan Normal University, Kunming, 650500, China. daphnecn@aliyun.com.ORCID http://orcid.org/0000-0001-6583-3255
Hongying JianFlower Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China. ynwildflower@aliyun.com.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31760048
6 · The paper itself

Abstract

Rosa laevigata is an excellent rose germplasm, highly resistant to aphid, and immune to both rose black spot and powdery mildew disease. It is also a well-known edible plant with a long history of medicinal use in China, having the effects of improving kidney function, inhibiting arteriosclerosis, and reducing inflammation. In this study, we assembled a high-quality chromosome-scale genome for R. laevigata by combining Illumina, PacBio, and Hi-C data, which has a length of approximately 494.2 Mb with a scaffold N50 of 68.6 Mb. A total of 493.2 Mb (99.8%) of the draft genome sequences were anchored on seven pseudochromosomes and two gapless pseudochromosomes were included in the final genome assembly. A total of 37,117 protein-coding genes were predicted, 34,047 of which were functionally annotated. Repeat annotation revealed 659,558 (285.6 Mb) repeat elements, accounting for 57.8% of the genome. The chromosome-scale genome provides valuable information to facilitate comparative genomic analysis of rose family and will accelerate genome-guided breeding and germplasm improvement of both R. laevigata itself and modern roses.

Indexed as

Chromosomes, PlantGenome, PlantRosaMolecular Sequence AnnotationRepetitive Sequences, Nucleic Acid

Identifiers

PMID39843470
PMCPMC11754454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.