Evidence map›Paper›PMID 39843430›Full record

ArticleNature communications2025

Chemical tools to define and manipulate interferon-inducible Ubl protease USP18.

Griffin J Davis, Anthony O Omole, Yejin Jung, Wioletta Rut, Ronald Holewinski, Kiall F Suazo, Hong-Rae Kim, Mo Yang, Thorkell Andresson, Marcin Drag and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Griffin J Davis *Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Anthony O Omole *Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.ORCID http://orcid.org/0000-0002-2323-2790
Yejin Jung *Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Wioletta RutDepartment of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland.
Ronald HolewinskiProtein Characterization Laboratory, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Frederick, MD, USA.
Kiall F SuazoProtein Characterization Laboratory, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Frederick, MD, USA.ORCID http://orcid.org/0000-0002-0803-8332
Hong-Rae KimChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Mo YangChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Thorkell AndressonProtein Characterization Laboratory, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Frederick, MD, USA.
Marcin DragDepartment of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland.ORCID http://orcid.org/0000-0001-8510-1967
Euna YooChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA. euna.yoo@nih.gov.ORCID http://orcid.org/0000-0001-5982-1979

Funding

Targeting ISG15 and USP18ZIABC011963 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI YOO, EUNA · 2020 to 2025
$2.5M
Intramural NIH HHS ZIA BC011963U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) ZIABC011963
6 · The paper itself

Abstract

Ubiquitin-specific protease 18 (USP18) is a multifunctional cysteine protease primarily responsible for deconjugating the interferon-inducible ubiquitin-like modifier ISG15 from protein substrates. Here, we report the design and synthesis of activity-based probes (ABPs) that incorporate unnatural amino acids into the C-terminal tail of ISG15, enabling the selective detection of USP18 activity over other ISG15 cross-reactive deubiquitinases (DUBs) such as USP5 and USP14. Combined with a ubiquitin-based DUB ABP, the USP18 ABP is employed in a chemoproteomics screening platform to identify and assess inhibitors of DUBs including USP18. We further demonstrate that USP18 ABPs can be utilized to profile differential activities of USP18 in lung cancer cell lines, providing a strategy that will help define the activity-related landscape of USP18 in different disease states and unravel important (de)ISGylation-dependent biological processes.

Indexed as

UbiquitinsUbiquitin ThiolesteraseCell Line, TumorCytokinesHumansInterferonsCytokinesInterferonsISG15 protein, humanUbiquitinsUbiquitin ThiolesteraseUSP18 protein, human

Identifiers

PMID39843430
PMCPMC11754618

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.