Evidence map›Paper›PMID 39843428›Full record

ArticleNature communications2025

Coordinated conformational changes in P450 decarboxylases enable hydrocarbons production from renewable feedstocks.

Wesley Cardoso Generoso, Alana Helen Santana Alvarenga, Isabelle Taira Simões, Renan Yuji Miyamoto, Ricardo Rodrigues de Melo, Ederson Paulo Xavier Guilherme, Fernanda Mandelli, Clelton Aparecido Santos, Rafaela Prata, Camila Ramos Dos Santos and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Wesley Cardoso GenerosoBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0002-5923-1458
Alana Helen Santana AlvarengaBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Isabelle Taira SimõesBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Renan Yuji MiyamotoBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Ricardo Rodrigues de MeloBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Ederson Paulo Xavier GuilhermeBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Fernanda MandelliBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Clelton Aparecido SantosBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0002-6725-8925
Rafaela PrataBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0001-7419-9196
Camila Ramos Dos SantosBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0003-0652-4211
Felippe Mariano ColombariBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0002-5431-1301
Mariana Abrahão Bueno MoraisBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0003-1012-1394
Rodrigo Pimentel FernandesSinochem Petróleo Brasil Ltda, Rio de Janeiro, RJ, Brazil.
Gabriela Felix PersinotiBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0002-0975-7283
Mario Tyago MurakamiBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.
Leticia Maria ZanphorlinBrazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil. leticia.zanphorlin@lnbr.cnpem.br.ORCID http://orcid.org/0000-0001-7283-5726

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo (São Paulo Research Foundation) 2018/02865-2Fundação de Amparo à Pesquisa do Estado de São Paulo (São Paulo Research Foundation) 2019/08855-1Fundação de Amparo à Pesquisa do Estado de São Paulo (São Paulo Research Foundation) 2021/14410-2
6 · The paper itself

Abstract

Fatty acid peroxygenases have emerged as promising biocatalysts for hydrocarbon biosynthesis due to their ability to perform C-C scission, producing olefins - key building blocks for sustainable materials and fuels. These enzymes operate through non-canonical and complex mechanisms that yield a bifurcated chemoselectivity between hydroxylation and decarboxylation. In this study, we elucidate structural features in P450 decarboxylases that enable the catalysis of unsaturated substrates, expanding the mechanistic pathways for decarboxylation reaction. Combining X-ray crystallography, molecular dynamics simulations, and machine learning, we have identified intricate molecular rearrangements within the active site that enable the Cβ atom of the substrate to approach the heme iron, thereby promoting oleate decarboxylation. Furthermore, we demonstrate that the absence of the aromatic residue in the Phe-His-Arg triad preserves chemoselectivity for alkenes, providing a distinct perspective on the molecular determinants of decarboxylation activity. Ultimately, these findings enable the sustainable production of biohydrocarbons from industrial feedstocks.

Indexed as

Carboxy-LyasesCytochrome P-450 Enzyme SystemHydrocarbonsAlkenesBiocatalysisCatalytic DomainCrystallography, X-RayDecarboxylationHydroxylationMolecular Dynamics SimulationOleic AcidProtein ConformationSubstrate SpecificityAlkenesCarboxy-LyasesCytochrome P-450 Enzyme SystemHydrocarbonsOleic Acid

Identifiers

PMID39843428
PMCPMC11754895

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.