Evidence map›Paper›PMID 39840753›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2025

A novel transgenic reporter of extracellular acidification in zebrafish elucidates skeletal muscle T-tubule pH regulation.

Leif R Neitzel, Maya Silver, Aaron H Wasserman, Samantha Rea, Charles C Hong, Charles H Williams

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. A novel transgenic reporter of extracellular acidification in zebrafish elucidates skeletal muscle T-tubule pH regulation.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Leif R NeitzelDepartment of Medicine, Michigan State University College of Human Medicine, East Lansing, Michigan, USA.ORCID 0000-0003-2621-6259
Maya SilverDepartment of Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Aaron H WassermanDepartment of Medicine, Michigan State University College of Human Medicine, East Lansing, Michigan, USA.
Samantha ReaDepartment of Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Charles C HongDepartment of Medicine, Michigan State University College of Human Medicine, East Lansing, Michigan, USA.
Charles H WilliamsDepartment of Medicine, Michigan State University College of Human Medicine, East Lansing, Michigan, USA.ORCID 0000-0002-0331-5652

Funding

Interdisciplinary Training Program Muscle BiologyT32AR007592 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI Aikaterini Kontrogianni-Konstantopoulos · 1996 to 2026
$11.7M
GPR68 as a novel modulator of septic lung injuryR01HL167192 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI Anna Birukova, CHARLES C HONG · 2023 to 2026
$2.4M
Mechanistic Insights into The Role of Microtubule Organizing Centers on Cardiomyocyte Structure and FunctionR01HL167133 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI CHARLES C HONG · 2023 to 2026
$2.0M
Chemical Genetic Analysis of Vertebrate DevelopmentR01GM118557 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HONG, CHARLES C · 2016 to 2019
$2.0M
National Institute of Health AR007592-26NHLBI NIH HHS R01 HL167133NHLBI NIH HHS R01 HL167192NIAMS NIH HHS T32 AR007592NIGMS NIH HHS R01 GM118557NIGMS NIH HHS R01GM118557TEDCO Maryland Innovation Initiative 0521-0010
6 · The paper itself

Abstract

Disruption of extracellular pH and proton-sensing can profoundly impact cellular and protein functions, leading to developmental defects. To visualize changes in extracellular pH in the developing embryo, we generated a zebrafish transgenic line that ubiquitously expresses the ratiometric pH-sensitive fluorescent protein pHluorin2, tethered to the extracellular face of the plasma membrane using a glycosylphosphatidylinositol (GPI) anchor. Monitoring of pHluorin2 with ratiometric fluorescence revealed dynamic and discrete domains of extracellular acidification over the first 72 h of embryonic development. These included acidification of the notochord intercalations, transient acidification of the otic placode, and persistent acidification of the extracellular space of the myotome at distinctly different pH from that within the T-tubules. Knockdown of centronuclear myopathy genes Bin1b (OMIM: 255200) and MTM1 (OMIM: 310400), which disrupt T-tubule formation, also disrupted myotome acidification. In this study we visualize extracellular acidic microdomains in the tissues of whole live animals. This real-time reporter line for directly measuring changes in extracellular pH can be used to illuminate the role of extracellular pH in normal physiological development and disease states.

Indexed as

Muscle, SkeletalZebrafishAnimalsAnimals, Genetically ModifiedGreen Fluorescent ProteinsHydrogen-Ion ConcentrationZebrafish ProteinsGreen Fluorescent ProteinsPHluorinZebrafish Proteinsacid homeostasisdevelopmentmyotometransverse tubulesT‐tubules

Identifiers

PMID39840753
PMCPMC12238821

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.