Evidence map›Paper›PMID 39838336›Full record

ArticleBMC plant biology2025

Population genomics of a natural Cannabis sativa L. collection from Iran identifies novel genetic loci for flowering time, morphology, sex and chemotyping.

Mahboubeh Mostafaei Dehnavi, Annabelle Damerum, Sadegh Taheri, Ali Ebadi, Shadab Panahi, George Hodgin, Brian Brandley, Seyed Alireza Salami, Gail Taylor

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Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Genetic Advances inPlants (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Mahboubeh Mostafaei DehnaviDepartment of Plant Sciences, University of California, Davis, CA, USA.
Annabelle DamerumDepartment of Plant Sciences, University of California, Davis, CA, USA.
Sadegh TaheriDepartment of Animal Science, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran.
Ali EbadiDepartment of Horticultural Science, Faculty of Agriculture, University of Tehran, Karaj, Iran.
Shadab PanahiDepartment of Horticultural Science, Faculty of Agriculture, University of Tehran, Karaj, Iran.
George HodginBiopharmaceutical Research Company, Castroville, CA, USA.
Brian BrandleyBiopharmaceutical Research Company, Castroville, CA, USA.
Seyed Alireza SalamiDepartment of Horticultural Science, Faculty of Agriculture, University of Tehran, Karaj, Iran. asalami@ut.ac.ir.
Gail TaylorDepartment of Plant Sciences, University of California, Davis, CA, USA. gtaylor@ucdavis.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFuture breeding and selection of Cannabis sativa L. for both drug production and industrial purposes require a source of germplasm with wide genetic variation, such as that found in wild relatives and progenitors of highly cultivated plants. Limited directional selection and breeding have occurred in this crop, especially informed by molecular markers.

resultsThis study investigated the population genomics of a natural cannabis collection comprising male and female individuals from various climatic zones in Iran. Using Genotyping-By-Sequencing (GBS), we sequenced 228 individuals from 35 populations. The data obtained enabled an association analysis, linking genotypes with key phenotypes such as inflorescence characteristics, flowering time, plant morphology, tetrahydrocannabinol (THC) and cannabidiol (CBD) content, and sex. We detected approximately 23,266 significant high-quality Single Nucleotide Polymorphisms (SNPs), establishing associations between markers and traits. The population structure analysis revealed that Iranian cannabis plants fall into five distinct groups. Additionally, a comparison with global data suggested that the Iranian populations is distinctive and generally closer to marijuana than to hemp, with some populations showing a closer affinity to hemp. The GWAS identified novel genetic loci associated with sex, yield, and chemotype traits in cannabis, which had not been previously reported.

conclusionThe study's findings highlight the distinct genetic structure of Iranian Cannabis populations. The identification of novel genetic loci associated with important traits suggests potential targets for future breeding programs. This research underscores the value of the Iranian cannabis germplasm as a resource for breeding and selection efforts aimed at improving Cannabis for various uses.

Indexed as

CannabisFlowersGenetic LociGenome, PlantGenetics, PopulationGenome-Wide Association StudyGenomicsGenotypeIranPhenotypePolymorphism, Single NucleotideCandidate GeneCannabis BreedingGenetic DiversityGenotyping-by-SequencingGWASPhenotypePopulation StructureSex

Identifiers

PMID39838336
PMCPMC11748290

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