Evidence map›Paper›PMID 39837347›Full record

ReviewGenome biology and evolution2025

Protein Quality Control is a Master Modulator of Molecular Evolution in Bacteria.

Carolina Diaz Arenas, Maristella Alvarez, Robert H Wilson, Eugene I Shakhnovich, C Brandon Ogbunugafor

Abstract readReview
In one paragraph

Review in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Amplicon/Protein Bead Display enables quantitativebioRxiv : the preprint server for biology · 2026
    Article
  3. Chaperonin recognition of protein dynamics drives drug resistance.bioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Review
  6. Collagen IV biosynthesis: Intracellular choreography of post-translational modifications.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Carolina Diaz ArenasDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0002-2308-8717
Maristella AlvarezDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.ORCID 0009-0008-1222-952X
Robert H WilsonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0003-4168-2805
Eugene I ShakhnovichDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-4769-2265
C Brandon OgbunugaforDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0002-1581-8345

Funding

Biophysical foundations of evolutionary dynamicsR35GM139571 · NIGMS · HARVARD UNIVERSITY · PI SHAKHNOVICH, EUGENE I · 2021 to 2025
$3.9M
Defining the Interplay Between Viral Adaptation and Host ProteostasisR01AI168166 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Matthew Donald Shoulders · 2022 to 2026
$2.9M
Massachusetts Institute of TechnologyNational Science Foundation's Division of Environmental Biology 2142720National Science Foundation's Division of Molecular and Cellular Biosciences 2244770NIAID NIH HHS R01 AI168166NIGMS NIH HHS R35 GM139571NIH HHS R01AI168166
6 · The paper itself

Abstract

The bacterial protein quality control (PQC) network comprises a set of genes that promote proteostasis (proteome homeostasis) through proper protein folding and function via chaperones, proteases, and protein translational machinery. It participates in vital cellular processes and influences organismal development and evolution. In this review, we examine the mechanistic bases for how the bacterial PQC network influences molecular evolution. We discuss the relevance of PQC components to contemporary issues in evolutionary biology including epistasis, evolvability, and the navigability of protein space. We examine other areas where proteostasis affects aspects of evolution and physiology, including host-parasite interactions. More generally, we demonstrate that the study of bacterial systems can aid in broader efforts to understand the relationship between genotype and phenotype across the biosphere.

Indexed as

BacteriaBacterial ProteinsEvolution, MolecularProteostasisBacterial Proteinschaperoneevolvabilitymolecular evolutionproteaseprotein evolutionprotein quality controlproteostasis

Identifiers

PMID39837347
PMCPMC11789785

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.