Evidence map›Paper›PMID 39833308›Full record

ArticleNature neuroscience2025

Mapping the cellular etiology of schizophrenia and complex brain phenotypes.

Laramie E Duncan, Tayden Li, Madeleine Salem, Will Li, Leili Mortazavi, Hazal Senturk, Naghmeh Shahverdizadeh, Sam Vesuna, Hanyang Shen, Jong Yoon and 7 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Big data and psychiatry: advances, constraints and future directions.World psychiatry : official journal of the World Psychiatric Association (WPA) · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Laramie E Duncan *Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA. laramied@stanford.edu.ORCID http://orcid.org/0000-0003-1131-661X
Tayden Li *Department of Statistics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-4553-210X
Madeleine SalemVice Provost for Undergraduate Education, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0009-0004-6259-3902
Will LiVice Provost for Undergraduate Education, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0009-0008-3441-235X
Leili MortazaviWu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9838-4935
Hazal SenturkDepartment of Computer Science, University of San Francisco, San Francisco, CA, USA.
Naghmeh ShahverdizadehDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Sam VesunaDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Hanyang ShenDepartment of Epidemiology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3273-9777
Jong YoonDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Gordon WangDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Jacob BallonDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6157-4847
Longzhi TanWu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-5618-1299
Brandon Scott PruettSchool of Medicine, University of Alabama at Birmingham, Birmingham, CA, USA.ORCID http://orcid.org/0000-0001-9760-1635
Brian KnutsonWu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-7669-426X
Karl DeisserothDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9440-3967
William J GiardinoDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-7474-7914

Funding

Sex hormones and post-traumatic stress disorder (PTSD)R01MH123486 · NIMH · STANFORD UNIVERSITY · PI DUNCAN, LARAMIE · 2020 to 2024
$2.1M
Sex Chromosome GWAS of Post-Traumatic Stress Disorder (PTSD)R21MH125358 · NIMH · STANFORD UNIVERSITY · PI DUNCAN, LARAMIE · 2021 to 2022
$443k
NIMH NIH HHS R01 MH123486NIMH NIH HHS R21 MH125358
6 · The paper itself

Abstract

Psychiatric disorders are multifactorial and effective treatments are lacking. Probable contributing factors to the challenges in therapeutic development include the complexity of the human brain and the high polygenicity of psychiatric disorders. Combining well-powered genome-wide and brain-wide genetics and transcriptomics analyses can deepen our understanding of the etiology of psychiatric disorders. Here, we leverage two landmark resources to infer the cell types involved in the etiology of schizophrenia, other psychiatric disorders and informative comparison of brain phenotypes. We found both cortical and subcortical neuronal associations for schizophrenia, bipolar disorder and depression. These cell types included somatostatin interneurons, excitatory neurons from the retrosplenial cortex and eccentric medium spiny-like neurons from the amygdala. In contrast we found T cell and B cell associations with multiple sclerosis and microglial associations with Alzheimer's disease. We provide a framework for a cell-type-based classification system that can lead to drug repurposing or development opportunities and personalized treatments. This work formalizes a data-driven, cellular and molecular model of complex brain disorders.

Indexed as

AmygdalaGene-Environment InteractionGyrus CinguliSchizophreniaAlzheimer DiseaseBipolar DisorderDatasets as TopicDepressionGenome-Wide Association StudyHumansMaleMicrogliaMultiple SclerosisNeuronsSingle-Cell Gene Expression Analysis

Identifiers

PMID39833308
PMCPMC11802450

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.