Evidence map›Paper›PMID 39833239›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the pine wood nematode carrier Arhopalus unicolor.

Xiangying Zou, Liqiong Zeng, Xingzao You, Jinghui Zhong, Chensheng Tang, Zhaofei Zheng, Xiaochun Lin, Biaoqiang Zhang, Xinliang Zhang, Yu Fang and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xiangying Zou *Key Laboratory of State Forestry and Grassland Administration on Timber Forest Breeding and Cultivation for Mountainous Areas in Southern China, Fujian Academy of Forestry, Fuzhou, 350012, China.ORCID http://orcid.org/0009-0005-2354-0178
Liqiong Zeng *Key Laboratory of State Forestry and Grassland Administration on Timber Forest Breeding and Cultivation for Mountainous Areas in Southern China, Fujian Academy of Forestry, Fuzhou, 350012, China.
Xingzao YouNanping Forestry Science and Technology Promotion Center, Nanping, 354200, China.
Jinghui ZhongQuanzhou Forestry Pest Control and Quarantine Station, Quanzhou, 362000, China.
Chensheng TangKey Laboratory of State Forestry and Grassland Administration on Timber Forest Breeding and Cultivation for Mountainous Areas in Southern China, Fujian Academy of Forestry, Fuzhou, 350012, China.
Zhaofei ZhengNanping Forestry Bureau, Nanping, 353000, China.
Xiaochun LinFuding Forestry Bureau, Fuding, 355200, China.
Biaoqiang ZhangShaxian Guanzhuang State-owned Forest Farm of Fujian Province, Shaxian, 365050, China.
Xinliang ZhangShaxian Forestry Pest Control and Quarantine Station, Shaxian, 365500, China.
Yu FangInstitute of Resources, Environment and Soil Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, China.
Yanli SunLanshan Forestry Development Centre, Linyi, 276001, China.
Shouping CaiKey Laboratory of State Forestry and Grassland Administration on Timber Forest Breeding and Cultivation for Mountainous Areas in Southern China, Fujian Academy of Forestry, Fuzhou, 350012, China. caishouping@163.com.
Jun SuFujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, College of Life Sciences, Fuzhou, 350002, China. junsu@fafu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arhopalus unicolor is a carrier of the pine wood nematode (PWN), which causes pine wilt disease, killing pine trees and causing considerable economic and environmental losses. While the A. unicolor mitochondrial genome has been published, a high-quality genome assembly and annotation of A. unicolor is not yet available. To address this, we assembled a chromosome-level reference genome assembly of A. unicolor with a combination of Illumina, PacBio, and Hi-C sequencing technologies. The final genome size was determined to be 1268.11 Mb, with a GC% of 32.44%, and the scaffold N50 value was 19.30 Mb. A total of 98.77% of the assembled sequences mapped to 10 pseudochromosomes, and BUSCO analysis revealed high completeness, with 97.15% gene coverage. Furthermore, the genome contains 71.74% repeat elements and encompasses 16,450 predicted protein-coding genes. This genome sequence of A. unicolor will be a valuable resource for understanding the genetics and evolutionary history of this species and for developing effective management strategies for this PWN carrier.

Indexed as

Genome, HelminthNematodaPinusTylenchidaAnimalsChromosomesGenome SizePlant Diseases

Identifiers

PMID39833239
PMCPMC11747178

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.