Evidence map›Paper›PMID 39833174›Full record

ArticleNature communications2025

Metabolic activities are selective modulators for individual segmentation clock processes.

Mitsuhiro Matsuda, Jorge Lázaro, Miki Ebisuya

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. NADThe EMBO journal · 2026
    Article
  3. Dynamics of the Mammalian Placental Metabolome in Placentogenesis and Embryonic Development.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mitsuhiro MatsudaEuropean Molecular Biology Laboratory (EMBL) Barcelona, Barcelona, Spain. mitsuhiro.matsuda@tu-dresden.de.ORCID http://orcid.org/0000-0003-1592-5199
Jorge LázaroEuropean Molecular Biology Laboratory (EMBL) Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-9901-356X
Miki EbisuyaEuropean Molecular Biology Laboratory (EMBL) Barcelona, Barcelona, Spain. miki.ebisuya@tu-dresden.de.ORCID http://orcid.org/0000-0003-1854-7496

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) EXC 2068 - 390729961EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101002564MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JP20332265
6 · The paper itself

Abstract

Numerous cellular and molecular processes during embryonic development prompt the fundamental question of how their tempos are coordinated and whether a common global modulator exists. While the segmentation clock tempo scales with the kinetics of gene expression and degradation processes of the core clock gene Hes7 across mammals, the coordination of these processes remains unclear. This study examines whether metabolic activities serve as a global modulator for the segmentation clock, finding them to be selective instead. Several metabolic inhibitions extend the clock period but affect key processes differently: glycolysis inhibition slows Hes7 protein degradation and production delay without altering intron delay, while electron transport chain inhibition extends intron delay without influencing the other processes. Combinations of distinct metabolic inhibitions exhibit synergistic effects. We propose that the scaled kinetics of segmentation clock processes across species may result from combined selective modulators shaped by evolutionary constraints, rather than a single global modulator.

Indexed as

Basic Helix-Loop-Helix ProteinsBiological ClocksBody PatterningEmbryonic DevelopmentAnimalsGene Expression Regulation, DevelopmentalGlycolysisIntronsMiceBasic Helix-Loop-Helix ProteinsHes7 protein, mouse

Identifiers

PMID39833174
PMCPMC11746943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.