Evidence map›Paper›PMID 39831958›Full record

ArticleAnalytical and bioanalytical chemistry2025

Application of predictive modeling tools for the identification of Ocimum spp. herbal products.

Evelyn J Abraham, Sarah J Chamberlain, Wilmer H Perera, R Teal Jordan, Joshua J Kellogg

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Bioactive compound identification without fractionation: an Ocimum spp. case study.Metabolomics : Official journal of the Metabolomic Society · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Evelyn J AbrahamIntercollege Graduate Degree Program in Plant Biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-4299-4413
Sarah J ChamberlainDepartment of Biology, Pennsylvania State University, University Park, PA, USA.
Wilmer H PereraCAMAG Scientific, Inc., Wilmington, NC, USA.
R Teal JordanDepartment of Veterinary and Biomedical Sciences, Pennsylvania State University, University Park, PA, USA.
Joshua J KelloggIntercollege Graduate Degree Program in Plant Biology, Pennsylvania State University, University Park, PA, USA. jjk6146@psu.edu.ORCID http://orcid.org/0000-0001-8685-0353

Funding

Multivariate Statistics and Machine Learning for Quality Control of Dried Ocimum ProductsF31AT012139 · NCCIH · PENNSYLVANIA STATE UNIVERSITY, THE · PI ABRAHAM, EVELYN · 2023 to 2024
$82k
Garden Club of America Anne C. Chatham Fellowship in Medicinal BotanyNational Institute of Food and Agriculture PEN04956NCCIH NIH HHS F31AT01213-01A1NCCIH NIH HHS F31 AT012139
6 · The paper itself

Abstract

Species identification of botanical products is a crucial aspect of research and regulatory compliance; however, botanical classification can be difficult, especially for morphologically similar species with overlapping genetic and metabolomic markers, like those in the genus Ocimum. Untargeted LC-MS metabolomics coupled with multivariate predictive modeling provides a potential avenue for improving herbal identity investigations, but the current dearth of reference materials for many botanicals limits the applicability of these approaches. This study investigated the potential of using greenhouse-grown authentic Ocimum to build predictive models for classifying commercially available Ocimum products. We found that three species, O. tenuiflorum, O. gratissimum, and O. basilicum, were chemically distinct based on their untargeted UPLC-MS/MS profiles when grown in controlled settings; combined with an orthogonal high-performance thin-layer chromatography (HPTLC) approach, O. tenuiflorum materials revealed two distinct chemotypes which could confound analysis. Three predictive models (partial least squares, LASSO regression, and random forest) were employed to extrapolate these findings to commercially available products; however, the controlled materials were significantly different from external samples, and all three chemometric models were unreliable in classifying external materials. LASSO was the most successful when classifying new greenhouse samples. Overall, this study highlights how growing and processing conditions can influence the complexity of botanical metabolome profiles; further studies are needed to characterize the factors driving herbal products' phytochemistry in conjunction with chemometric predictive modeling.

Indexed as

OcimumChromatography, High Pressure LiquidChromatography, Thin LayerLeast-Squares AnalysisMetabolomicsTandem Mass SpectrometryBotanical identityChemometricsMetabolomicsNatural productsPredictive modeling

Identifiers

PMID39831958
PMCPMC13352132

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.