In one paragraphArticle in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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0citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
2 · The registryThe trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
3 · Its place in the literatureWho cites it
0 citing papers in PubMed.
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4 · The recordCorrections and comments
5 · Who and what moneyAuthors and funding
41 authors.
Merve KaptanDivision of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0001-8187-4911 Alexandra TinnermannDepartment of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0001-9646-0201 Ali KhatibiMcConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.ORCID 0000-0003-0679-0499 Alice DabbaghMax Planck Research Group Pain Perception, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.ORCID 0009-0005-9515-6810 Christian BüchelDepartment of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Christian W KündigSpinal Cord Injury Center, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID 0009-0007-0351-6108 Christine S W LawDivision of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0003-0524-6029 Dario PfyfferDivision of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0002-2406-9251 David J LythgoeDepartment of Neuroimaging, Institute of Psychology, Psychiatry & Neuroscience, King's College London, London, UK.ORCID 0000-0002-5078-9025 Dimitra TsivakaDepartment of Neuroimaging, Institute of Psychology, Psychiatry & Neuroscience, King's College London, London, UK.ORCID 0000-0002-4584-0236 Dimitri Van De VilleDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-2879-3861 Falk EippertMax Planck Research Group Pain Perception, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.ORCID 0000-0002-3986-1719 Fauziyya MuhammadDepartment of Neurosurgery, University of Oklahoma Health Sciences Center, OK, USA.ORCID 0000-0003-0028-0375 Gary H GloverRadiological Sciences Laboratory, Department of Radiology, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0002-0562-0474 Gergely DavidSpinal Cord Injury Center, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-9379-5193 Grace HaynesStephenson School of Biomedical Engineering at the University of Oklahoma in Norman, OK, USA.ORCID 0000-0002-4862-0554 Jan HaakerDepartment of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0001-8366-9559 Jürgen FinsterbuschDepartment of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Katherine T MartucciCenter for Translational Pain Medicine, Department of Anesthesiology, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0002-7791-2492 Kimberly J HemmerlingDepartment of Physical Therapy and Human Movement Sciences, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.ORCID 0000-0001-9913-492X Mahdi Mobarak-AbadiCentre de recherche de l'Institut Universitaire de Gériatrie de Montréal, Montréal, Quebec, Canada.ORCID 0000-0002-2114-9416 Mark A HoggarthDepartment of Physical Therapy and Human Movement Sciences, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.ORCID 0000-0001-6516-5840 Matthew A HowardDepartment of Neuroimaging, Institute of Psychology, Psychiatry & Neuroscience, King's College London, London, UK.ORCID 0000-0002-9359-3057 Molly G BrightDepartment of Physical Therapy and Human Movement Sciences, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.ORCID 0000-0001-7257-9646 Nawal KinanyDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-3804-0991 Olivia S KowalczykFunctional Imaging Laboratory, Department of Imaging Neuroscience, Queen Square Institute of Neurology, University College London, London, UK.ORCID 0000-0002-6543-290X Patrick FreundSpinal Cord Injury Center, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-4851-2246 Robert L BarryAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA.
Sean MackeyDivision of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0001-7744-5348 Shahabeddin VahdatMcConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-0494-6974 Simon SchadingSpinal Cord Injury Center, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-3969-193X Stephen B McMahonWolfson Centre for Age Related Diseases, King's College London, London UK.
Todd ParishDepartment of Biomedical Engineering, McCormick School of Engineering, Northwestern University, Evanston, Illinois, USA.
Véronique Marchand-PauvertSorbonne Université, Inserm, CNRS, Laboratoire d'Imagerie Biomédicale, LIB, F-75013, Paris, France.
Yufen ChenDepartment of Biomedical Engineering, McCormick School of Engineering, Northwestern University, Evanston, Illinois, USA.ORCID 0000-0001-8959-9571 Zachary A SmithDepartment of Neurosurgery, University of Oklahoma Health Sciences Center, OK, USA.
Kenneth A WeberDivision of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.ORCID 0000-0002-0916-9174 Funding
Characterization of central pain mechanisms using simultaneous spinal cord-brain functional imagingR01NS109450 · NINDS · STANFORD UNIVERSITY · PI GLOVER, GARY H, MACKEY, SEAN C · 2018 to 2022
$2.9MSpinal cord functional connectivity as a biomarker of spinal cord dysfunctionR01EB027779 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI BARRY, ROBERT L · 2019 to 2022
$2.7MDermatomal Mapping with Spinal Cord Functional Magnetic Resonance ImagingR01NS133305 · NINDS · STANFORD UNIVERSITY · PI Kenneth Arnold Weber · 2023 to 2026
$2.3MMRI-Derived Neuromuscular Signatures to Predict Surgical Response in Degenerative Cervical MyelopathyR01NS128478 · NINDS · STANFORD UNIVERSITY · PI Kenneth Arnold Weber · 2023 to 2026
$2.2MNeuroimaging-Based Brain and Spinal Cord Biomarkers for Cervical RadiculopathyK23NS104211 · NINDS · STANFORD UNIVERSITY · PI WEBER, KENNETH ARNOLD · 2018 to 2022
$875kThe Impact of Opioids on Chronic Pain: Clinical Research and Career Training in Spinal Cord fMRI and Brain Reward SystemsR00DA040154 · NIDA · DUKE UNIVERSITY · PI MARTUCCI, KATHERINE THERESA · 2018 to 2021
$827kCausal connectivity along the spinal cord using high-resolution 7T fMRIR21EB031211 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI BARRY, ROBERT L · 2021 to 2021
$462kMentoring in Discovery and Validation of Clinical Chronic Pain BiomarkersK24NS126781 · NINDS · STANFORD UNIVERSITY · PI MACKEY, SEAN C · 2021 to 2021
$324kInvestigating Pain Processing in the Brain, Brainstem, and Spinal Cord with fMRIF32AT007800 · NCCIH · NORTHWESTERN UNIVERSITY AT CHICAGO · PI WEBER, KENNETH ARNOLD · 2012 to 2015
$198kNCCIH NIH HHS F32 AT007800NIBIB NIH HHS R01 EB027779NIBIB NIH HHS R21 EB031211NIDA NIH HHS R00 DA040154NINDS NIH HHS K23 NS104211NINDS NIH HHS K24 NS126781NINDS NIH HHS R01 NS109450NINDS NIH HHS R01 NS128478NINDS NIH HHS R01 NS133305
6 · The paper itselfAbstract
Functional magnetic resonance imaging (fMRI) of the spinal cord is relevant for studying sensation, movement, and autonomic function. Preprocessing of spinal cord fMRI data involves segmentation of the spinal cord on gradient-echo echo planar imaging (EPI) images. Current automated segmentation methods do not work well on these data, due to the low spatial resolution, susceptibility artifacts causing distortions and signal drop-out, ghosting, and motion-related artifacts. Consequently, this segmentation task demands a considerable amount of manual effort which takes time and is prone to user bias. In this work, we (i) gathered a multi-center dataset of spinal cord gradient-echo EPI with ground-truth segmentations and shared it on OpenNeuro https://openneuro.org/datasets/ds005143/versions/1.3.0, and (ii) developed a deep learning-based model, EPISeg, for the automatic segmentation of the spinal cord on gradient-echo EPI data. We observe a significant improvement in terms of segmentation quality compared to other available spinal cord segmentation models. Our model is resilient to different acquisition protocols as well as commonly observed artifacts in fMRI data. The training code is available at https://github.com/sct-pipeline/fmri-segmentation/, and the model has been integrated into the Spinal Cord Toolbox as a command-line tool.
Indexed as
Echo Planar ImagingFunctional Magnetic Resonance ImagingSegmentationSpinal Cord
Identifiers
PMID39829895
PMCPMC11741348
What OpenQuestion holds
Textmetadata
LicenceCC BY-ND
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