Evidence map›Paper›PMID 39829026›Full record

ArticleG3 (Bethesda, Md.)2025

Reference genome of Calochortus tolmiei Hook. & Arn. (Liliaceae), a cat's ear mariposa lily.

Jacob B Landis, Julianna J Harden, Evan Eifler, Gretta L Buttelman, Adriana I Hernández, Thomas J Givnish, Susan R Strickler, Chelsea D Specht

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jacob B LandisSchool of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-5631-5365
Julianna J HardenSchool of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY 14853, USA.
Evan EiflerDepartment of Botany, University of Wisconsin-Madison, Madison, WI 53706, USA.
Gretta L ButtelmanNegaunee Institute for Plant Conservation Science and Action, Chicago Botanic Garden, Glencoe, IL 60022, USA.
Adriana I HernándezSchool of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-7882-3427
Thomas J GivnishDepartment of Botany, University of Wisconsin-Madison, Madison, WI 53706, USA.
Susan R StricklerNegaunee Institute for Plant Conservation Science and Action, Chicago Botanic Garden, Glencoe, IL 60022, USA.
Chelsea D SpechtSchool of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY 14853, USA.

Funding

C.D.S. and S.R.S . and DEB 1929296National Science Foundation DEB 1929318
6 · The paper itself

Abstract

Calochortus tolmiei Hook. & Arn., a bulbous monocot with cat's ear flowers in the angiosperm family Liliaceae, is a perennial herb native to northern California, Oregon, and Washington. Calochortus exhibits substantial morphological and karyotype diversity with multiple floral forms and a haploid chromosome number varying from 6 to 10. Here, we present the first high-quality reference assembly in Liliaceae for C. tolmiei, with a scaffolded assembly of 2.9 Gb with an N50 of 296 Mb. Notably, 92% of the assembled genome is scaffolded into 10 pseudomolecules, matching the documented chromosome count of C. tolmiei. The genome contains 31,049 protein-coding genes, with 86.2% being functionally annotated. The closest reference-quality genome assembly to C. tolmiei is from Chionographis japonica (Willd.) Maxim. (Melianthiaceae), which diverged ∼83 Mya, providing a valuable genomic resource in the Liliales, an order which lacks genomic resources.

Indexed as

Genome, PlantGenomicsChromosomes, PlantMolecular Sequence AnnotationPhylogenyfloral syndromegenome annotationHiCLilialesPacBio HiFiscaffolding

Identifiers

PMID39829026
PMCPMC11917488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.