Evidence map›Paper›PMID 39827266›Full record

ArticleCommunications biology2025

Reduced UPF1 levels in senescence impair nonsense-mediated mRNA decay.

Dahyeon Koh, Yebin Lee, Kyuchan Kim, Hyeong Bin Jeon, Chaehwan Oh, Sangik Hwang, Minjung Lim, Kwang-Pyo Lee, Yeonkyoung Park, Yong Ryoul Yang and 5 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Dahyeon KohDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Yebin LeeDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Kyuchan KimDepartment of Bio-AI Convergence, Chungnam National University, Daejeon, 34134, Republic of Korea.
Hyeong Bin JeonDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Chaehwan OhDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Sangik HwangMolecular Aging Biology Laboratory (MABL), Department of Biochemistry, College of Natural Science, Chungnam National University, Daejeon, 34134, Republic of Korea.
Minjung LimDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Kwang-Pyo LeeAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.
Yeonkyoung ParkDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Yong Ryoul YangAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.
Yoon Ki KimDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0000-0003-1303-072X
Donghwan ShimDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.ORCID http://orcid.org/0000-0002-0223-595X
Myriam GorospeLaboratory of Genetics and Genomics, National Institute on Aging Intramural Research Program, National Institutes of Health, Baltimore, MD, 21224, USA.ORCID http://orcid.org/0000-0001-5439-3434
Ji Heon NohMolecular Aging Biology Laboratory (MABL), Department of Biochemistry, College of Natural Science, Chungnam National University, Daejeon, 34134, Republic of Korea. journi@cnu.ac.kr.ORCID http://orcid.org/0000-0003-4106-453X
Kyoung Mi KimDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea. km.kim@cnu.ac.kr.ORCID http://orcid.org/0000-0002-2845-5678

Funding

Chungnam National University (CNU) N/AMinistry of Education (Ministry of Education of the Republic of Korea) NRF-2019R1I1A3A01061807Ministry of Education (Ministry of Education of the Republic of Korea) NRF-2022R1A6A3A13068849National Research Foundation (NRF) NRF-2020R1C1C1010869National Research Foundation of Korea (NRF) NRF-2022R1A2C1010973National Research Foundation of Korea (NRF) RS-2021-NR057006
6 · The paper itself

Abstract

Cells regulate gene expression through various RNA regulatory mechanisms, and this regulation often becomes less efficient with age, contributing to accelerated aging and various age-related diseases. Nonsense-mediated mRNA decay (NMD), a well-characterized RNA surveillance mechanism, degrades aberrant mRNAs with premature termination codons (PTCs) to prevent the synthesis of truncated proteins. While the role of NMD in cancer and developmental and genetic diseases is well documented, its implications in human aging remain largely unexplored. This study reveals a significant decline in the levels of the protein UPF1, a key player in NMD, during cellular senescence. Additionally, NMD substrates accumulate in senescent cells, along with decreased levels of cap-binding protein 80/20 (CBP80/20)-dependent translation (CT) factors and reduced binding to active polysomes, indicating reduced efficiency of NMD. Moreover, knockdown of UPF1 in proliferating WI-38 cells induces senescence, as evidenced by increased senescence-associated β-galactosidase activity, alterations in senescence-associated molecular markers, increased endogenous γ-H2AX levels, and reduced cell proliferation. These findings suggest that the decline in UPF1 levels during cellular senescence accelerates the senescent phenotype by impairing NMD activity and the consequent accumulation of abnormal mRNA.

Indexed as

Cellular SenescenceNonsense Mediated mRNA DecayRNA HelicasesTrans-ActivatorsCell LineCell ProliferationHumansRNA, MessengerRNA HelicasesRNA, MessengerTrans-ActivatorsUPF1 protein, human

Identifiers

PMID39827266
PMCPMC11742877

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.