Evidence map›Paper›PMID 39827170›Full record

ArticleScientific data2025

Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra.

Lan Lan, Haiyan Li, Shisong Xu, Yueting Xu, Qingyun Leng, Linbi Zhang, Linqiao Wu, Junmei Yin, Zhiqiang Wu, Junhai Niu

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lan Lan *National Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Haiyan Li *National Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Shisong XuNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Yueting XuNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Qingyun LengNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Linbi ZhangHainan Daxin Landscape Co., Ltd, Haikou, China.
Linqiao WuHainan Big Lake Bridge Technology Co., Ltd, Haikou, China.
Junmei YinNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
Zhiqiang WuShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China. wuzhiqiang@caas.cn.ORCID http://orcid.org/0000-0002-4238-7317
Junhai NiuNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China. niujunahi2014@sina.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bougainvillea glabra Choisy, a common perennial shrub or climbing vine in tropical and subtropical areas, has significant ornamental and ecological value due to its showy floriferous blooms and adaptability to multiple environmental stresses. In this study, based on PacBio and Hi-C sequencing data, we presented the haplotype-resolved, and chromosome-level assembled genomes for B. glabra (2n = 34). We obtained two haplotypes with genome size of 2,855,692,602 bp and 2,889,511,499 bp, N50 of 165 Mbp and 167 Mbp, and both anchored to 17 chromosomes with anchor ratio of 97.07% and 97.55%, respectively. Through the BUSCO evaluation process, the two assembled haplotypes both exhibited the high score of 96%. By combining the high-confidence different evidence of genome structure annotation pipeline we annotated each haplotype containing ~33,000 predicted genes, of which 86% were functionally annotated by different databases. These high-quality haplotypes assembly and annotation results will serve as a great genomic resource to explore the ornamental traits and environmental adaptability and accelerate improvement in future.

Indexed as

Chromosomes, PlantGenome, PlantHaplotypesMolecular Sequence Annotation

Identifiers

PMID39827170
PMCPMC11742905

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.