Evidence map›Paper›PMID 39824836›Full record

ArticleNature communications2025

SAMHD1 shapes deoxynucleotide triphosphate homeostasis by interconnecting the depletion and biosynthesis of different dNTPs.

Claudia McCown, Corey H Yu, Dmitri N Ivanov

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Transition metal activation reframes SAMHD1 regulation.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Claudia McCownDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-2988-5124
Corey H YuDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-1374-4194
Dmitri N IvanovDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, USA. ivanov@uthscsa.edu.ORCID http://orcid.org/0000-0002-9442-3316

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Biochemistry of SAMHD1-mediated innate immunity responsesR01AI136697 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IVANOV, DMITRI N · 2019 to 2022
$1.9M
Biochemistry of SAMHD1-mediated innate immunity responsesR37AI136697 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI DMITRI N IVANOV · 2024 to 2026
$1.7M
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RP200058NCI NIH HHS P30 CA054174NIAID NIH HHS R01 AI136697NIAID NIH HHS R37 AI136697U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AI136697Welch Foundation AQ-1996-20190330
6 · The paper itself

Abstract

SAMHD1 is a dNTPase that impedes replication of HIV-1 in myeloid cells and resting T lymphocytes. Here we elucidate the substrate activation mechanism of SAMHD1, which involves dNTP binding at allosteric sites and transient tetramerization. Our findings reveal that tetramerization alone is insufficient to promote dNTP hydrolysis; instead, the activation mechanism requires an inactive tetrameric intermediate with partially occupied allosteric sites. The equilibrium between inactive and active tetrameric states regulates dNTPase activity, driven by the binding and dissociation of additional allosteric dNTP ligands to the preassembled tetramer. Furthermore, catalytic efficiency, but not substrate specificity, is modulated by the identity of the dNTPs occupying the allosteric sites. We show how this allosteric regulation shapes deoxynucleotide homeostasis by balancing dNTP production and SAMHD1-catalyzed depletion. Notably, SAMHD1 exhibits a distinct functionality, which we term facilitated dNTP depletion, whereby increased biosynthesis of certain dNTPs enhances the depletion of others. The regulatory relationship between the biosynthesis and depletion of different dNTPs sheds light on the emerging role of SAMHD1 in the biology of dNTP homeostasis with implications for HIV/AIDS, innate antiviral immunity, T cell disorders, telomere maintenance and therapeutic efficacy of nucleoside analogs.

Indexed as

DeoxyribonucleotidesNucleotidesSAM Domain and HD Domain-Containing Protein 1Allosteric RegulationAllosteric SiteHEK293 CellsHIV-1HomeostasisHumansHydrolysisProtein MultimerizationSubstrate SpecificityDeoxyribonucleotidesNucleotidesSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, human

Identifiers

PMID39824836
PMCPMC11742054

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.