Evidence map›Paper›PMID 39823383›Full record

ReviewJournal of chemical information and modeling2025

Permeability Benchmarking: Guidelines for Comparing

Christian Jorgensen, Raleigh M Linville, Ian Galea, Edward Lambden, Martin Vögele, Charles Chen, Evan P Troendle, Fiorella Ruggiu, Martin B Ulmschneider, Birgit Schiøtt and 1 more

Abstract readComparative StudyReview
In one paragraph

Review in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Guidelines for Comparing Circular Dichroism Spectroscopy and Molecular Dynamics Simulations for Biomolecules.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  5. Acute arsenic trioxide inhibits the cardiac transient outward KCurrent research in structural biology · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Frontiers in toxicology · 2026
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Christian JorgensenSchool of Medicine, Pharmacy and Biomedical Sciences, Faculty of Science & Health, University of Portsmouth, Portsmouth PO1 2DT, Hampshire, U.K.ORCID 0000-0003-1894-7158
Raleigh M LinvilleThe Picower Institute for Learning and Memory, Massachusetts Institute of Technology, 43 Vassar Street, Cambridge, Massachusetts 02139, United States.
Ian GaleaClinical Neurosciences, Clinical and Experimental Sciences, Faculty of Medicine, University of Southampton, Southampton SO16 6YD, U.K.
Edward LambdenDept. of Chemistry, King's College London, London WC2R 2LS, U.K.
Martin VögeleDepartment of Computer Science, Stanford University, Stanford, California 94305, United States.ORCID 0000-0002-1712-358X
Charles ChenSynthetic Biology Group, Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.ORCID 0000-0001-7695-5215
Evan P TroendleWellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, County Antrim, BT9 7BL, Northern Ireland, U.K.ORCID 0000-0003-4825-4088
Fiorella RuggiuKimia Therapeutics, 740 Heinz Avenue, Berkeley, California 94710, United States.ORCID 0000-0001-7260-3255
Martin B UlmschneiderDept. of Chemistry, King's College London, London WC2R 2LS, U.K.
Birgit SchiøttDept. of Chemistry, Aarhus University, Langelandsgade, 140 8000 Aarhus C, Denmark.ORCID 0000-0001-9937-1562
Christian D LorenzDept. of Engineering, King's College London, London WC2R 2LS, U.K.ORCID 0000-0003-1028-4804

Funding

Single Cell Dissection of Cerebrovascular Dysfunction in Parkinson's Disease and Amyotrophic Lateral SclerosisF32NS128067 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LINVILLE, RALEIGH MILLER · 2022 to 2024
$213k
NINDS NIH HHS F32 NS128067
6 · The paper itself

Abstract

Permeability is a measure of the degree to which cells can transport molecules across biological barriers. Units of permeability are distance per unit time (typically cm/s), where accurate measurements are needed to define drug delivery in homeostasis and to model dysfunction occurring during disease. This perspective offers a set of community-led guidelines to benchmark permeability data across multidisciplinary approaches and different biological contexts. First, we lay out the analytical framework for three methodologies to calculate permeability:

Indexed as

BenchmarkingComputer SimulationAnimalsBlood-Brain BarrierHumansPermeability

Identifiers

PMID39823383
PMCPMC11815851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.