Evidence map›Paper›PMID 39820505›Full record

ArticlePediatric nephrology (Berlin, Germany)2025

Investigation of a targeted panel of gut microbiome-derived toxins in children with chronic kidney disease.

Mina Ebrahimi, Stephen R Hooper, Mark M Mitsnefes, Ramachandran S Vasan, Paul L Kimmel, Bradley A Warady, Susan L Furth, Erum A Hartung, Michelle R Denburg, Arthur M Lee

Abstract readMulticenter Study
In one paragraph

Article in Pediatric nephrology (Berlin, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Association of Dietary Micronutrient Intake and the Metabolome in Children with CKD.Clinical journal of the American Society of Nephrology : CJASN · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mina EbrahimiDrexel College of Medicine, Philadelphia, PA, USA.
Stephen R HooperDepartment of Health Sciences, School of Medicine, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA.
Mark M MitsnefesDivision of Nephrology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Ramachandran S VasanSchool of Public Health, University of Texas San Antonio, San Antonio, TX, USA.
Paul L KimmelDivision of Kidney, Urologic, and Hematologic Diseases, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA.
Bradley A WaradyDivision of Nephrology, Children's Mercy Kansas City, Kansas City, MO, USA.
Susan L FurthDivision of Nephrology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Erum A HartungDivision of Nephrology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Michelle R DenburgDivision of Nephrology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Arthur M Leefor the CKiD Study Investigators and the NIDDK CKD Biomarkers Consortium, 3500 Civic Center Boulevard, Philadelphia, PA, 19041, USA. leeam@chop.edu.ORCID http://orcid.org/0000-0002-4969-3632

Funding

Chronic Kidney Disease in Children Study (C-Kid)U01DK066174 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI SUSAN L. FURTH · 2003 to 2026
$25.1M
CKiD Cardiovascular Testing Travel SupplementU01DK066143 · NIDDK · CHILDREN'S MERCY HOSP (KANSAS CITY, MO) · PI Bradley Alan Warady · 2003 to 2026
$24.2M
The Kidney Disease in Children Data Management and Analysis Center (KIDMAC)U24DK066116 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI Derek K Ng · 2018 to 2026
$12.6M
Research Project Core 2P50DK114786 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Michelle Denburg, SUSAN L. FURTH · 2017 to 2026
$9.6M
The Penn-StARR Program for Research in ResidencyR38HL143613 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KLEIN, PETER S · 2018 to 2021
$1.4M
The Central Biochemistry Laboratory for the Chronic Kidney Disease in Children Cohort (CKiD)U24DK137522 · NIDDK · UNIVERSITY OF MINNESOTA · PI Jesse C Seegmiller · 2023 to 2026
$1.3M
Chronic Kidney Disease Biomarkers Consortium (CKD BioCon) U01U01DK106982 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI DENBURG, MICHELLE, FURTH, SUSAN L. · 2015 to 2019
$817k
Metabolomic Profiling for Discovery of Biomarkers of Neurocognitive Impairment in Children with Chronic Kidney DiseaseR21AT009752 · NCCIH · CHILDREN'S HOSP OF PHILADELPHIA · PI DENBURG, MICHELLE · 2018 to 2019
$487k
Mentoring of Early Career Researchers from Diverse BackgroundsK26DK138375 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Michelle Denburg · 2023 to 2026
$424k
Identifying genetic drivers of circulating metabolites associated with cardiac risk in pediatric chronic kidney diseaseK38HL169660 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI LEE, ARTHUR · 2023 to 2024
$212k
NCCIH NIH HHS R21 AT009752NHLBI NIH HHS K38 HL169660NHLBI NIH HHS R38 HL143613NIDDK NIH HHS K26 DK138375NIDDK NIH HHS P50 DK114786NIDDK NIH HHS U01 DK066143NIDDK NIH HHS U01 DK066174NIDDK NIH HHS U01 DK106982NIDDK NIH HHS U24 DK066116NIDDK NIH HHS U24 DK137522
6 · The paper itself

Abstract

backgroundThe gut-kidney axis is implicated in chronic kidney disease (CKD) morbidity. We describe how a panel of gut microbiome-derived toxins relates to kidney function and neurocognitive outcomes in children with CKD, consisting of indoleacetate, 3-indoxylsulfate, p-cresol glucuronide, p-cresol sulfate, and phenylacetylglutamine.

methodsThe Chronic Kidney Disease in Children (CKiD) cohort is a North American multicenter prospective cohort that enrolled children aged 6 months to 16 years with estimated glomerular filtration rate (eGFR) 30-89 ml/min/1.73 m

resultsThere were 150 CKiD participants included in this study. All toxins levels were significantly inversely correlated with eGFR (Spearman's rho - 0.45 to - 0.69). Children with non-glomerular CKD had significantly higher levels of 3-indoxylsulfate, phenylacetylglutamine, and p-cresol glucuronide. The toxin levels did not associate with neurocognitive outcomes. P-cresol glucuronide and phenylacetylglutamine negatively associated with left ventricular mass index z score, but did not associate with left ventricular hypertrophy.

conclusionsChildren with CKD have high levels of circulating gut microbiome-derived toxins. The levels of these toxins are strongly correlated with eGFR. There appear to be differences in toxin level based on glomerular versus non-glomerular etiology, even when accounting for the differences in eGFR between these two subgroups. In this sample, we did not detect any associations between these toxin levels and neurocognitive or cardiac outcomes.

Indexed as

Gastrointestinal MicrobiomeRenal Insufficiency, ChronicAdolescentChildChild, PreschoolCresolsFemaleGlomerular Filtration RateGlutamineHumansIndicanIndoleacetic AcidsInfantKidneyMaleProspective Studies4-cresol sulfateCresolsGlutamineIndicanindoleacetic acidIndoleacetic AcidsphenylacetylglutamineSulfuric Acid EstersChronic kidney diseaseChronic Kidney Disease in Children (CKiD) studyGut microbiomeUremic toxins

Identifiers

PMID39820505
PMCPMC12376272

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.