Evidence map›Paper›PMID 39820378›Full record

ArticleNature communications2025

Predictive genetic circuit design for phenotype reprogramming in plants.

Ci Kong, Yin Yang, Tiancong Qi, Shuyi Zhang

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. The switch-liker's guide to plant synthetic gene circuits.The Plant journal : for cell and molecular biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ci KongSchool of Pharmaceutical Sciences, Tsinghua University, Beijing, China.
Yin YangSchool of Life Sciences, Tsinghua University, Beijing, China.
Tiancong QiSchool of Life Sciences, Tsinghua University, Beijing, China.
Shuyi ZhangSchool of Pharmaceutical Sciences, Tsinghua University, Beijing, China. shuyizhang@tsinghua.edu.cn.ORCID http://orcid.org/0000-0001-8500-5836

Funding

Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2024YFA0917100National Natural Science Foundation of China (National Science Foundation of China) 32171416National Natural Science Foundation of China (National Science Foundation of China) 32370756National Natural Science Foundation of China (National Science Foundation of China) U22A20552
6 · The paper itself

Abstract

Plants, with intricate molecular networks for environmental adaptation, offer groundbreaking potential for reprogramming with predictive genetic circuits. However, realizing this goal is challenging due to the long cultivation cycle of plants, as well as the lack of reproducible, quantitative methods and well-characterized genetic parts. Here, we establish a rapid (~10 days), quantitative, and predictive framework in plants. A group of orthogonal sensors, modular synthetic promoters, and NOT gates are constructed and quantitatively characterized. A predictive model is developed to predict the designed circuits' behavior accurately. Our versatile and robust framework, validated by constructing 21 two-input circuits with high prediction accuracy (R

Indexed as

ArabidopsisGene Regulatory NetworksNicotianaGene Expression Regulation, PlantGenetic EngineeringPhenotypePlants, Genetically ModifiedPromoter Regions, Genetic

Identifiers

PMID39820378
PMCPMC11739397

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.