Evidence map›Paper›PMID 39819047›Full record

ArticleAmerican journal of physiology. Renal physiology2025

Assays to enhance metabolic phenotyping in the kidney.

Safaa Hammoud, Justin Kern, Sandip Mukherjee, Andrew J Lutkewitte, Prabhleen Singh, Kate Newberry, Brian N Finck, Leslie S Gewin

Abstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Safaa HammoudDivision of Nephrology, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.ORCID 0000-0001-9418-4071
Justin KernDivision of Nephrology, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.ORCID 0009-0008-8219-7623
Sandip MukherjeeDivision of Nutritional Sciences and Obesity Medicine, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.
Andrew J LutkewitteDivision of Nutritional Sciences and Obesity Medicine, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.
Prabhleen SinghDivision of Nephrology and Hypertension, University of California San Diego, San Diego, California, United States.ORCID 0000-0001-5555-261X
Kate NewberryDivision of Nephrology, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.
Brian N FinckDivision of Nutritional Sciences and Obesity Medicine, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.ORCID 0000-0001-5411-3674
Leslie S GewinDivision of Nephrology, Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States.ORCID 0000-0002-6146-1092

Funding

Washington University Nutrition Obesity Research CenterP30DK056341 · NIDDK · WASHINGTON UNIVERSITY · PI Dominic N Reeds · 1999 to 2026
$30.2M
WU P&FP30DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI Clay F. Semenkovich · 2013 to 2026
$27.1M
longitudinal assessment of stress and stress-related concepts across a behavioral weight loss interventionP20GM144269 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Chelsea L Kracht, John P Thyfault · 2022 to 2026
$14.9M
Washington University Chronic KidneyDisease National Resource CenterU54DK137332 · NIDDK · WASHINGTON UNIVERSITY · PI BENJAMIN D. HUMPHREYS · 2023 to 2026
$4.5M
TGF-beta Pathways that Protect Epithelia in Chronic Renal InjuryR01DK108968 · NIDDK · WASHINGTON UNIVERSITY · PI GEWIN, LESLIE S · 2016 to 2025
$3.7M
Renal Oxygenation and Mitochondrial Function in AKIR01DK107852 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SINGH, PRABHLEEN · 2016 to 2020
$1.7M
Proximal Tubule Alternative Splicing and Progression of Diabetic Kidney DiseaseR01DK136663 · NIDDK · WASHINGTON UNIVERSITY · PI BENJAMIN D. HUMPHREYS · 2025 to 2026
$1.1M
Adipose-Specific Phosphatidic Acid Phosphatase Activity of Lipin 1 Regulates Systemic Insulin SensitivityK01DK126990 · NIDDK · WASHINGTON UNIVERSITY · PI LUTKEWITTE, ANDREW · 2021 to 2024
$466k
American Heart Association (AHA) 24POST1199428BLRD VA I01 BX002175BLRD VA I01 BX003425HHS | National Institutes of Health (NIH) DK 056341HHS | National Institutes of Health (NIH) DK107852HHS | National Institutes of Health (NIH) DK-108968HHS | National Institutes of Health (NIH) DK126990HHS | National Institutes of Health (NIH) P20GM144269HHS | National Institutes of Health (NIH) P30DK020579HHS | National Institutes of Health (NIH) U54DK137332NIDDK NIH HHS K01 DK126990NIDDK NIH HHS P30 DK020579NIDDK NIH HHS P30 DK056341NIDDK NIH HHS R01 DK107852NIDDK NIH HHS R01 DK108968NIDDK NIH HHS R01 DK136663NIDDK NIH HHS U54 DK137332NIGMS NIH HHS P20 GM144269U.S. Department of Veterans Affairs (VA) BX002175U.S. Department of Veterans Affairs (VA) BX003425
6 · The paper itself

Abstract

The kidney is highly metabolically active, and injury induces changes in metabolism that can impact repair and fibrosis progression. Changes in the expression of metabolism-related genes and proteins provide valuable data, but functional metabolic assays are critical to confirm changes in metabolic activity. Stable isotope metabolomics is the gold standard, but these involve considerable cost and specialized expertise. Both the Seahorse bioflux assays and substrate oxidation assays in tissues ex vivo are two relatively cost-effective assays for interrogating metabolism. Many institutions have access to Seahorse bioflux analyzers, which can easily and quickly generate data, but guidelines to enhance reproducibility are lacking. We investigate how variables (e.g. primary vs. immortalized cells, time in culture) impact the data generated by Seahorse bioflux analyzers. In addition, we show the utility of

Indexed as

Energy MetabolismFatty AcidsKidneyKidney CortexMetabolomicsAnimalsFemaleMaleMiceMice, Inbred C57BLOxidation-ReductionPhenotypeReproducibility of ResultsFatty Acidsfatty acid oxidationkidney metabolismmitochondrial respirationproximal tubules

Identifiers

PMID39819047
PMCPMC12145867

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.