Evidence map›Paper›PMID 39819014›Full record

ArticleAntimicrobial agents and chemotherapy2025

Phase I trial comparing bile acid and short-chain fatty acid alterations in stool collected from human subjects treated with omadacycline or vancomycin.

Jinhee Jo, Chenlin Hu, Thomas D Horvath, Sigmund J Haidacher, Khurshida Begum, M Jahangir Alam, Kevin W Garey

Registry-linked trialAbstract readClinical Trial, Phase I
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06030219 (Microbiome Effect of Omadacycline on Healthy Volunteers), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06030219 phase1completednot on this map

Microbiome Effect of Omadacycline on Healthy Volunteers

TypeinterventionalSponsorUniversity of HoustonRan2020 to 2023Enrolled32ConditionsHealthy VolunteersArmsOmadacycline, Vancomycin Pill, Moxifloxacin
3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jinhee JoDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, Texas, USA.
Chenlin HuDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, Texas, USA.
Thomas D HorvathDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas, USA.
Sigmund J HaidacherDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas, USA.
Khurshida BegumDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, Texas, USA.
M Jahangir AlamDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, Texas, USA.
Kevin W GareyDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, Texas, USA.ORCID 0000-0003-2063-7503

Funding

Diversity Supplement: Decoding the clinical impact of the recent evolution of metronidazole resistance on Clostridium difficile infectionR01AI139261 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Kevin W Garey, Julian G Hurdle · 2018 to 2026
$6.0M
Texas Medical Center Training Program in Antimicrobial ResistanceT32AI141349 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI GARSIN, DANIELLE A · 2019 to 2023
$1.3M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) 2R01AI139261NIAID NIH HHS R01 AI139261NIAID NIH HHS T32 AI141349Paratek Pharmaceuticals G0505124University of Houston New Investigator Award
6 · The paper itself

Abstract

Omadacycline, an aminomethylcycline tetracycline, has a low propensity to cause IMPORTANCE: The purpose of this study was to assess bile acid and SCFA changes in stool samples obtained from healthy volunteers given omadacycline or vancomycin. Stool samples were collected daily from 16 healthy volunteers given a 10-day oral course of omadacycline or vancomycin. Vancomycin caused a larger change in the primary bile acids and SCFA concentrations compared with omadacycline. The metabolic findings help further our understanding of the mechanistic basis for the lower-risk properties of omadacycline causing CDI and warrant phase 2 investigations using omadacycline as a CDI antibiotic. CLINICAL TRIALS: This study is registered with ClinicalTrials.gov as NCT06030219.

Indexed as

Anti-Bacterial AgentsBile Acids and SaltsFatty Acids, VolatileFecesTetracyclinesVancomycinAdultClostridioides difficileFemaleHealthy VolunteersHumansMaleMiddle AgedTandem Mass SpectrometryYoung AdultAnti-Bacterial AgentsBile Acids and SaltsFatty Acids, VolatileomadacyclineTetracyclinesVancomycinbile acidsClostridioides difficilehuman subjectsshort-chain fatty acids

Identifiers

PMID39819014
PMCPMC11823362

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.