Evidence map›Paper›PMID 39817454›Full record

ArticleThe Journal of clinical investigation2025

An epigenetic pathway regulates MHC-II expression and function in B cell lymphoma models.

Te Zhang, Oguzhan Beytullahoglu, Rima Tulaiha, Amanda Luvisotto, Aileen Szczepanski, Natsumi Tsuboyama, Zibo Zhao, Lu Wang

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Te ZhangDepartment of Biochemistry and Molecular Genetics and.
Oguzhan BeytullahogluDepartment of Biochemistry and Molecular Genetics and.
Rima TulaihaDepartment of Biochemistry and Molecular Genetics and.
Amanda LuvisottoDepartment of Biochemistry and Molecular Genetics and.
Aileen SzczepanskiDepartment of Biochemistry and Molecular Genetics and.
Natsumi TsuboyamaDepartment of Biochemistry and Molecular Genetics and.
Zibo ZhaoDepartment of Biochemistry and Molecular Genetics and.
Lu WangDepartment of Biochemistry and Molecular Genetics and.

Funding

Role of BAP1/ASXL3 complex in transcriptional regulation and development-ADMIN SUPPL for EquipmentR35GM146979 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Lu Wang · 2022 to 2026
$2.2M
NIGMS NIH HHS R35 GM146979
6 · The paper itself

Abstract

Mutations or homozygous deletions of MHC class II (MHC-II) genes are commonly found in B cell lymphomas that develop in immune-privileged sites and have been associated with patient survival. However, the mechanisms regulating MHC-II expression, particularly through genetic and epigenetic factors, are not yet fully understood. In this study, we identified a key signaling pathway involving the histone H2AK119 deubiquitinase BRCA1 associated protein 1 (BAP1), the interferon regulatory factor interferon regulatory factor 1 (IRF1), and the MHC-II transactivator class II transactivator (CIITA), which directly activates MHC-II gene expression. Disruption of the BAP1/IRF1/CIITA axis leads to a functional attenuation of MHC-II expression and MHC-II-dependent immune cell infiltration, leading to accelerated tumor growth in immunocompetent mice. Additionally, we demonstrated that pharmacological inhibition of polycomb repressive complex 1 (PRC1) - which deposits histone H2K119Ub and opposes BAP1 activity - can restore MHC-II gene expression in BAP1-deficient B cell lymphoma cells. These findings suggest that BAP1 may function as a tumor suppressor by regulating the tumor microenvironment and immune response. Our study also establishes the rationale for therapeutic strategies to restore tumor-specific MHC-II expression and enhance immunotherapy outcomes at epigenetic levels in B cell lymphoma treatment.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticHistocompatibility Antigens Class IILymphoma, B-CellAnimalsCell Line, TumorHistonesHumansInterferon Regulatory Factor-1MiceMice, KnockoutNuclear ProteinsSignal TransductionTrans-ActivatorsTumor Suppressor ProteinsUbiquitin ThiolesteraseBAP1 protein, humanBAP1 protein, mouseHistocompatibility Antigens Class IIHistonesInterferon Regulatory Factor-1MHC class II transactivator proteinNuclear ProteinsTrans-ActivatorsTumor Suppressor ProteinsUbiquitin ThiolesteraseEpigeneticsOncology

Identifiers

PMID39817454
PMCPMC11735100

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.