Evidence map›Paper›PMID 39817401›Full record

ArticleDevelopment (Cambridge, England)2025

A case for broadening our view of mechanism in developmental biology.

B Duygu Özpolat, Swathi Arur, Mansi Srivastava

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

B Duygu ÖzpolatWashington University in Saint Louis, Department of Biology, Saint Louis, MO 63139, USA.ORCID 0000-0002-1900-965X
Swathi ArurDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77401, USA.ORCID 0000-0002-6941-2711
Mansi SrivastavaDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-2126-8634

Funding

Cellular and Molecular Mechanisms of Germline RegenerationR35GM138008 · NIGMS · WASHINGTON UNIVERSITY · PI Busra Duygu Ozpolat · 2020 to 2026
$2.6M
Stem cell regulation during development and whole-body regenerationR35GM153252 · NIGMS · HARVARD UNIVERSITY · PI Mansi Srivastava · 2024 to 2026
$1.4M
National Science Foundation IOS-2401057NIGMS NIH HHS 1R35GM138008-01NIGMS NIH HHS R35 GM138008NIGMS NIH HHS R35 GM153252NIH HHS GM153252
6 · The paper itself

Abstract

Developmental biologists can perform studies that describe a phenomenon (descriptive work) and/or explain how the phenomenon works (mechanistic work). There is a prevalent perception that molecular/genetic explanations achieved via perturbations of gene function are the primary means of advancing mechanistic knowledge. We believe this to be a limited perspective, one that does not effectively represent the breadth of work in our field. We surveyed a representative and diverse group of colleagues to share their views on what it takes to infer mechanism. Here, we briefly examine the factors that have shaped the dominant view of mechanism, summarize responses to the survey, present our views, and suggest a path forward that embraces a broad outlook on the diversity of studies that advance knowledge in our field.

Indexed as

Developmental BiologyAnimalsHumans

Identifiers

PMID39817401
PMCPMC11829770

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.