Evidence map›Paper›PMID 39816555›Full record

ArticleTranslational cancer research2024

Machine learning-based pan-cancer study of classification and mechanism of BRAF inhibitor resistance.

Yuhang Zhao, Kai Yang, Yujun Chen, Zexi Lv, Qing Wang, Yuanyuan Zhong, Xiqun Chen

Abstract read
In one paragraph

Article in Translational cancer research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuhang ZhaoDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Kai YangDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Yujun ChenDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Zexi LvDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Qing WangDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Yuanyuan ZhongDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Xiqun ChenDepartment of Integrative Medicine, Huashan Hospital, Fudan University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: V-raf murine sarcoma viral oncogene homolog B1 (BRAF) inhibitor (BRAFi) therapy resistance affects approximately 15% of cancer patients, leading to disease recurrence and poor prognosis. The aim of the study was to develop a machine-learning based method to identify patients who are at high-risk of BRAFi resistance and potential biomarker. Methods: From Cancer Cell Line Encyclopedia (CCLE) and Genomics of Drug Sensitivity in Cancer (GDSC) databases, we collected RNA sequencing and half maximal inhibitory concentration (IC Results: Conclusions: We established a gene-expression model using ML methods, consisting of 37 variables based on RNA-seq database, which was externally validated and could be used to predict BRAFi resistance. Meanwhile, our findings provide valuable insights into the molecular mechanisms of BRAFi resistance, enabling the identification of high-risk patients.

Indexed as

BRAF inhibitor resistancedifferential expression genesmachine learning (ML)pan-cancerprognosis

Identifiers

PMID39816555
PMCPMC11730697

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.