Evidence map›Paper›PMID 39815105›Full record

ArticleNature methods2025

Super-photostable organic dye for long-term live-cell single-protein imaging.

Do-Hyeon Kim, Hong Minh Triet, Sun Hyeok Lee, Sina Jazani, Seongjae Jang, Syed Ali Abbas Abedi, Xiaogang Liu, Jongcheol Seo, Taekjip Ha, Young-Tae Chang and 1 more

Abstract read
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In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Do-Hyeon Kim *Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea. genesis@postech.ac.kr.ORCID http://orcid.org/0000-0002-0116-7756
Hong Minh Triet *Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID http://orcid.org/0000-0002-9426-6832
Sun Hyeok Lee *School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang, Republic of Korea.
Sina JazaniDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Maryland, Baltimore, MD, USA.
Seongjae JangDepartment of Chemistry, Pohang University of Science and Technology, Pohang, Republic of Korea.
Syed Ali Abbas AbediScience, Mathematics and Technology Cluster, Singapore University of Technology and Design, Singapore, Singapore.ORCID http://orcid.org/0000-0001-6131-5039
Xiaogang LiuScience, Mathematics and Technology Cluster, Singapore University of Technology and Design, Singapore, Singapore.ORCID http://orcid.org/0000-0002-2553-2068
Jongcheol SeoDepartment of Chemistry, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID http://orcid.org/0000-0001-5844-4585
Taekjip HaDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Maryland, Baltimore, MD, USA.ORCID http://orcid.org/0000-0003-2195-6258
Young-Tae ChangDepartment of Chemistry, Pohang University of Science and Technology, Pohang, Republic of Korea. ytchang@postech.ac.kr.ORCID http://orcid.org/0000-0002-1927-3688
Sung Ho RyuDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea. sungho@postech.ac.kr.ORCID http://orcid.org/0000-0003-0913-3048

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organic dyes play a crucial role in live-cell imaging because of their advantageous properties, such as photostability and high brightness. Here we introduce a super-photostable and bright organic dye, Phoenix Fluor 555 (PF555), which exhibits an order-of-magnitude longer photobleaching lifetime than conventional organic dyes without the requirement of any anti-photobleaching additives. PF555 is an asymmetric cyanine structure in which, on one side, the indole in the conventional Cyanine-3 is substituted with 3-oxo-quinoline. PF555 provides a powerful tool for long-term live-cell single-molecule imaging, as demonstrated by the imaging of the dynamic single-molecule interactions of the epidermal growth factor receptor with clathrin-coated structures on the plasma membrane of a live cell under physiological conditions.

Indexed as

CarbocyaninesFluorescent DyesSingle Molecule ImagingCell MembraneClathrinErbB ReceptorsHeLa CellsHumansMicroscopy, FluorescencePhotobleachingCarbocyaninesClathrinErbB ReceptorsFluorescent Dyes

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.