Evidence map›Paper›PMID 39814993›Full record

ReviewNature chemical biology2025

Aromatic side-chain crosslinking in RiPP biosynthesis.

Sanath K Kandy, Michael A Pasquale, Jonathan R Chekan

Abstract readReview
In one paragraph

Review in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Emerging classes of copper enzymes.Current opinion in chemical biology · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Myxarylin: TotalJournal of the American Chemical Society · 2026
    Article
  6. Article
  7. RadicalJournal of the American Chemical Society · 2026
    Article
  8. S9 protease WprPCommunications chemistry · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. ThiF-Like Enzyme Chemistry in Primary and Secondary Metabolism.Chembiochem : a European journal of chemical biology · 2025
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Indolylamide Macrocyclization by aOrganic letters · 2025
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sanath K Kandy *Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA.ORCID 0000-0002-0490-4045
Michael A Pasquale *Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA.ORCID 0000-0002-5480-6355
Jonathan R ChekanDepartment of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA. jrchekan@uncg.edu.ORCID 0000-0003-4651-0594

Funding

Bioinformatic Guided Discovery and Characterization of New RiPP Natural ProductsR35GM147439 · NIGMS · UNIVERSITY OF NORTH CAROLINA GREENSBORO · PI Jonathan Rodi Chekan · 2022 to 2026
$1.8M
Predoctoral Training: Innovative Technologies for Natural Products and Integrative Medicine ResearchT32AT008938 · NCCIH · UNIVERSITY OF NORTH CAROLINA GREENSBORO · PI Nadja B Cech, Jonathan Rodi Chekan · 2016 to 2026
$1.6M
NCCIH NIH HHS T32 AT008938NIGMS NIH HHS R35 GM147439U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM1474439U.S. Department of Health & Human Services | NIH | National Center for Complementary and Integrative Health (NCCIH) T32AT008938
6 · The paper itself

Abstract

Peptide cyclization is a defining feature of many bioactive molecules, particularly in the ribosomally synthesized and post-translationally modified peptide (RiPP) family of natural products. Although enzymes responsible for N- to C-terminal macrocyclization, lanthipeptide formation or heterocycle installation have been well documented, a diverse array of cyclases have been discovered that perform crosslinking of aromatic side chains. These enzymes form either biaryl linkages between two aromatic amino acids or a crosslink between one aliphatic amino acid and one aromatic amino acid. Incredibly, nature has evolved multiple routes to install these crosslinks. While enzymes such as cytochromes P450 and radical S-adenosylmethionine (rSAM) enzymes are well known from other pathways, this role in RiPP biosynthesis has only recently been appreciated. Others, such as burpitide cyclases and DUF3328 (UstY) family proteins, come from eukaryotes and are relatively uncharacterized enzyme classes. This Review covers the emerging theme of aromatic amino acid side-chain crosslinking in RiPPs by focusing on the newly discovered enzymes responsible for catalyzing these challenging reactions.

Indexed as

Amino Acids, AromaticPeptides, CyclicCross-Linking ReagentsProtein Processing, Post-TranslationalAmino Acids, AromaticCross-Linking ReagentsPeptides, Cyclic

Identifiers

PMID39814993
PMCPMC11897777

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.