Evidence map›Paper›PMID 39814991›Full record

ArticleNature chemical biology2025

Orthogonalized human protease control of secreted signals.

Carlos A Aldrete, Connor C Call, Lucas E Sant'Anna, Alexander E Vlahos, Jimin Pei, Qian Cong, Xiaojing J Gao

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Genetic Code Expanded T Cell for Controllable Immunotherapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Leukocyte dynamics inFrontiers in immunology · 2025
    Article
  9. Review
  10. Perspectives on Synthetic Protein Circuits in Mammalian Cells.Current opinion in biomedical engineering · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Carlos A Aldrete *Department of Chemical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3795-4572
Connor C Call *Department of Chemical Engineering, Stanford University, Stanford, CA, USA.
Lucas E Sant'AnnaDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Alexander E VlahosDepartment of Chemical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2154-8791
Jimin PeiEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Qian CongEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xiaojing J GaoDepartment of Chemical Engineering, Stanford University, Stanford, CA, USA. xjgao@stanford.edu.ORCID http://orcid.org/0000-0002-3094-1456

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
A Novel Class of Synthetic Receptors to Empower the Age of mRNA TherapiesDP2EB035891 · NIBIB · STANFORD UNIVERSITY · PI Xiaojing J Gao · 2023 to 2026
$2.3M
Synthetic DNA-free Circuits for “Scarless” Programming of Mammalian CellsR00EB027723 · NIBIB · STANFORD UNIVERSITY · PI GAO, XIAOJING J · 2020 to 2022
$747k
NIBIB NIH HHS DP2 EB035891NIBIB NIH HHS R00 EB027723NIGMS NIH HHS T32 GM007276Welch Foundation I-2095-20220331
6 · The paper itself

Abstract

Synthetic circuits that regulate protein secretion in human cells could support cell-based therapies by enabling control over local environments. Although protein-level circuits enable such potential clinical applications, featuring orthogonality and compactness, their non-human origin poses a potential immunogenic risk. In this study, we developed Humanized Drug Induced Regulation of Engineered CyTokines (hDIRECT) as a platform to control cytokine activity exclusively using human-derived proteins. We sourced a specific human protease and its FDA-approved inhibitor. We engineered cytokines (IL-2, IL-6 and IL-10) whose activities can be activated and abrogated by proteolytic cleavage. We used species specificity and re-localization strategies to orthogonalize the cytokines and protease from the human context that they would be deployed in. hDIRECT should enable local cytokine activation to support a variety of cell-based therapies, such as muscle regeneration and cancer immunotherapy. Our work offers a proof of concept for the emerging appreciation of humanization in synthetic biology for human health.

Indexed as

CytokinesPeptide HydrolasesHumansInterleukin-10Interleukin-2Interleukin-6Protease InhibitorsProtein EngineeringProteolysisCytokinesInterleukin-10Interleukin-2Interleukin-6Peptide HydrolasesProtease Inhibitors

Identifiers

PMID39814991
PMCPMC12515425

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.