Evidence map›Paper›PMID 39814836›Full record

ArticleCommunications biology2025

Functional genomics implicates ebony in the black pupae phenotype of tephritid fruit flies.

Daniel F Paulo, Thu N M Nguyen, Chris M Ward, Renee L Corpuz, Angela N Kauwe, Pedro Rendon, Rocio E Y Ruano, Amanda A S Cardoso, Georgia Gouvi, Elisabeth Fung and 8 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Decoding and engineering temperature-sensitive lethality inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Daniel F Paulo *Department of Plant and Environmental Protection Sciences, University of Hawai'i at Mānoa, Honolulu, USA.ORCID https://orcid.org/0000-0003-0159-4480
Thu N M Nguyen *School of BioSciences, The University of Melbourne, Melbourne, Australia.ORCID https://orcid.org/0000-0002-2138-4707
Chris M WardSchool of Biological Sciences, The University of Adelaide, Adelaide, Australia.ORCID http://orcid.org/0000-0003-0227-0189
Renee L CorpuzU.S. Department of Agriculture, Agriculture Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, USA.ORCID https://orcid.org/0009-0005-6600-0788
Angela N KauweU.S. Department of Agriculture, Agriculture Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, USA.ORCID https://orcid.org/0000-0003-3505-7472
Pedro RendonInternational Atomic Energy Agency, Technical Cooperation, Division for Latin America and the Caribbean, MOSCAMED Program, Guatemala City, Guatemala.
Rocio E Y RuanoMOSCAMED Program, Guatemala City, Guatemala.
Amanda A S CardosoInsect Pest Control Laboratory, Department of Nuclear Sciences and Applications, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Seibersdorf, Austria.
Georgia GouviInsect Pest Control Laboratory, Department of Nuclear Sciences and Applications, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Seibersdorf, Austria.
Elisabeth FungSchool of Agriculture, Food and Wine, University of Adelaide, Adelaide, Australia.ORCID https://orcid.org/0000-0003-0933-822X
Peter CrispSchool of Agriculture, Food and Wine, University of Adelaide, Adelaide, Australia.
Anzu OkadaSchool of Biological Sciences, The University of Adelaide, Adelaide, Australia.ORCID https://orcid.org/0009-0008-3437-4584
Amanda ChooSchool of Biological Sciences, The University of Adelaide, Adelaide, Australia.ORCID https://orcid.org/0000-0002-4510-3615
Christian StaufferDepartment of Ecosystem Management, Climate and Biodiversity, Boku University, Vienna, Austria.ORCID https://orcid.org/0000-0002-2985-8911
Kostas BourtzisInsect Pest Control Laboratory, Department of Nuclear Sciences and Applications, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Seibersdorf, Austria.ORCID https://orcid.org/0000-0002-3999-4095
Sheina B SimU.S. Department of Agriculture, Agriculture Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, USA.ORCID https://orcid.org/0000-0003-0914-6914
Simon W BaxterSchool of BioSciences, The University of Melbourne, Melbourne, Australia. simon.baxter@unimelb.edu.au.ORCID https://orcid.org/0000-0001-5773-6578
Scott M GeibU.S. Department of Agriculture, Agriculture Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, USA. scott.geib@usda.gov.ORCID http://orcid.org/0000-0002-9511-5139

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The remarkable diversity of insect pigmentation offers a captivating avenue for studying evolution and genetics. In tephritids, understanding the molecular basis of mutant traits is also crucial for applied entomology, enabling the creation of genetic sexing strains through genome editing, thus facilitating sex-sorting before sterile insect releases. Here, we present evidence from classical and modern genetics showing that the black pupae (bp) phenotype in the GUA10 strain of Anastrepha ludens is caused by a large deletion at the ebony locus, removing the gene's entire coding region. Targeted knockout of ebony induced analogous bp phenotypes across six major tephritid agricultural pests, demonstrating that disruption of Ebony alone is sufficient to produce the mutant trait in distantly related species. This functional characterization further allowed a deeper exploration of Ebony's role in pigmentation and development across life stages in diverse species. Our findings offer key insights for molecular engineering of sexing strains based on the bp marker and for future evolutionary developmental biology studies in tephritids.

Indexed as

Insect ProteinsPigmentationPupaTephritidaeAnimalsFemaleGenomicsMalePhenotypeInsect Proteins

Identifiers

PMID39814836
PMCPMC11736145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.