Evidence map›Paper›PMID 39814710›Full record

ArticleNature communications2025

Herpesviruses mimic zygotic genome activation to promote viral replication.

Eva Neugebauer, Stephanie Walter, Jiang Tan, Nir Drayman, Vedran Franke, Michiel van Gent, Sandra Pennisi, Pia Veratti, Karla S Stein, Isabelle Welker and 8 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Eva Neugebauer *Institute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.ORCID http://orcid.org/0009-0009-6298-5267
Stephanie Walter *Institute for Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054, Erlangen, Germany.
Jiang Tan *Institute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.ORCID http://orcid.org/0009-0005-8827-3533
Nir DraymanThe Department of Molecular Biology and Biochemistry, the Center for Virus Research and the Center for Complex Biological Systems, The University of California, Irvine, Irvine, CA, 92697, USA.
Vedran FrankeBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Helmholtz Society, Berlin, Germany.ORCID http://orcid.org/0000-0003-3606-6792
Michiel van GentHerpesLabNL, Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-3798-5360
Sandra PennisiInstitute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.
Pia VerattiInstitute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.
Karla S SteinInstitute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.
Isabelle WelkerInstitute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany.ORCID http://orcid.org/0009-0007-9507-3622
Savaş TayThe Pritzker School for Molecular Engineering, The University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-1912-6020
Georges M G M VerjansHerpesLabNL, Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-2465-2674
H T Marc TimmersGerman Cancer Consortium (DKTK), partner site Freiburg, a partnership between the DKFZ and Medical Center-University of Freiburg, and Department of Urology, Medical Center-University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0001-7062-1417
Altuna AkalinBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Helmholtz Society, Berlin, Germany.ORCID http://orcid.org/0000-0002-0468-0117
Markus LandthalerBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Helmholtz Society, Berlin, Germany.ORCID http://orcid.org/0000-0002-1075-8734
Armin EnsserInstitute for Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054, Erlangen, Germany.ORCID http://orcid.org/0000-0001-8873-3863
Emanuel WylerBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Helmholtz Society, Berlin, Germany.ORCID http://orcid.org/0000-0002-9884-1806
Florian FullInstitute of Virology, University Medical Center, and Faculty of Medicine, Albert-Ludwig-University Freiburg, Freiburg, Germany. florian.full@uniklinik-freiburg.de.ORCID http://orcid.org/0000-0003-1900-5891

Funding

Harnessing cell-to-cell variability to understand viral infection outcomesDP2AI154437 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Nir Drayman · 2022 to 2026
$2.3M
Ultra-Sensitive Multiplexed Quantification of Proteins Secreted from Single-Cells - Resubmission 01R01GM127527 · NIGMS · UNIVERSITY OF CHICAGO · PI TAY, SAVAS · 2019 to 2022
$1.6M
Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01KI2017Deutsche Forschungsgemeinschaft (German Research Foundation) En 423/5-1Deutsche Forschungsgemeinschaft (German Research Foundation) FOR5200 DEEP-DV, 443644894Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) AI154437NIAID NIH HHS DP2 AI154437NIGMS NIH HHS R01 GM127527
6 · The paper itself

Abstract

Zygotic genome activation (ZGA) is crucial for maternal to zygotic transition at the 2-8-cell stage in order to overcome silencing of genes and enable transcription from the zygotic genome. In humans, ZGA is induced by DUX4, a pioneer factor that drives expression of downstream germline-specific genes and retroelements. Here we show that herpesviruses from all subfamilies, papillomaviruses and Merkel cell polyomavirus actively induce DUX4 expression to promote viral transcription and replication. Analysis of single-cell sequencing data sets from patients shows that viral DUX4 activation is of relevance in vivo. Herpes-simplex virus 1 (HSV-1) immediate early proteins directly induce expression of DUX4 and its target genes, which mimics zygotic genome activation. Upon HSV-1 infection, DUX4 directly binds to the viral genome and promotes viral transcription. DUX4 is functionally required for infection, since genetic depletion by CRISPR/Cas9 as well as degradation of DUX4 by nanobody constructs abrogates HSV-1 replication. Our results show that DNA viruses including herpesviruses mimic an embryonic-like transcriptional program that prevents epigenetic silencing of the viral genome and facilitates herpesviral gene expression.

Indexed as

HerpesviridaeHerpesvirus 1, HumanHomeodomain ProteinsVirus ReplicationZygoteAnimalsCRISPR-Cas SystemsGene Expression Regulation, ViralGenome, ViralHEK293 CellsHumansTranscription, GeneticHomeodomain Proteins

Identifiers

PMID39814710
PMCPMC11735616

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.