Evidence map›Paper›PMID 39814146›Full record

ArticleThe Journal of allergy and clinical immunology2025

The relationship between the early-life gastrointestinal microbiome and childhood nocturnal cough.

Amy A Eapen, Tengfei Ma, Alexandra R Sitarik, Ze Meng, Dennis R Ownby, Andrea E Cassidy-Bushrow, Ganesa Wegeinka, Edward M Zoratti, Susan V Lynch, Christine C Johnson and 1 more

Abstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Amy A EapenDepartment of Internal Medicine, Division of Allergy and Clinical Immunology, Henry Ford Health, Detroit, Mich; Department of Public Health Sciences, Henry Ford Health, Detroit, Mich. Electronic address: aeapen1@hfhs.org.
Tengfei MaDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Center for Bioinformatics, Henry Ford Health, Detroit, Mich; Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing, Mich.
Alexandra R SitarikDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing, Mich.
Ze MengDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Center for Bioinformatics, Henry Ford Health, Detroit, Mich.
Dennis R OwnbyDivision of Allergy and Immunology, Medical College of Georgia at Augusta University, Augusta, Ga.
Andrea E Cassidy-BushrowDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Department of Pediatrics and Human Development, College of Human Medicine, Michigan State University, East Lansing, Mich.
Ganesa WegeinkaDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Department of Obstetrics, Gynecology and Reproductive Biology, College of Human Medicine, Michigan State University, East Lansing, Mich.
Edward M ZorattiDepartment of Internal Medicine, Division of Allergy and Clinical Immunology, Henry Ford Health, Detroit, Mich; Department of Public Health Sciences, Henry Ford Health, Detroit, Mich.
Susan V LynchDivision of Gastroenterology, Department of Medicine, University of California, San Francisco, Calif.
Christine C JohnsonDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Department of Obstetrics, Gynecology and Reproductive Biology, College of Human Medicine, Michigan State University, East Lansing, Mich.
Albert M LevinDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich; Center for Bioinformatics, Henry Ford Health, Detroit, Mich. Electronic address: alevin1@hfhs.org.

Funding

The Effect of Dog-Keeping and the Intestinal Microbiota on Immune DevelopmentP01AI089473 · NIAID · HENRY FORD HEALTH SYSTEM · PI OWNBY, DENNIS R · 2012 to 2024
$25.7M
Delivery mode, environment and the gut microbiome: influence on childhood body sizeR01HD082147 · NICHD · HENRY FORD HEALTH SYSTEM · PI CASSIDY-BUSHROW, ANDREA E · 2016 to 2020
$3.0M
Early Environmental Hygiene and Pediatric AtopyR01AI050681 · NIAID · HENRY FORD HEALTH SYSTEM · PI JOHNSON, CHRISTINE C · 2002 to 2006
$2.9M
EARLY LIFE VITAMIN D, RACIAL DISPARITIES, AND WHEEZINGR01HL113010 · NHLBI · HENRY FORD HEALTH SYSTEM · PI WEGIENKA, GANESA REBECCA · 2012 to 2014
$1.2M
NHLBI NIH HHS R01 HL113010NIAID NIH HHS L30 AI178760NIAID NIH HHS P01 AI089473NIAID NIH HHS R01 AI050681NICHD NIH HHS R01 HD082147
6 · The paper itself

Abstract

backgroundNocturnal cough affects approximately 1 in 3 children, can negatively affect child health, and is often attributable to asthma. The association of the gut microbiome with nocturnal cough has not been investigated.

objectiveWe investigated the association between early-life gut microbiome composition and nocturnal cough overall and in the context of asthma.

methodsGut microbiota 1-month (neonate) and 6-month (infant) specimens from 512 children in the Wayne County, Health, Environment, Allergy, and Asthma Longitudinal Study were profiled using 16S ribosomal RNA V4 sequencing. Nocturnal cough (parental report) and asthma (parent-reported doctor's diagnosis) were assessed at age 4 years. Microbiome regression-based kernel association tests (MiRKAT) were used to assess the relationship between gut microbiota composition and nocturnal cough overall and in the context of asthma. Operational taxonomic unit (OTU) associations were conducted using negative binomial regression, adjusting for multiple comparisons using the false discovery rate.

resultsStool microbial composition differences during infancy were associated with nocturnal cough (weighted UniFrac P = .045); 78 OTUs were significantly associated with nocturnal cough overall (false discovery rate < 0.05); and 110 OTUs were significantly associated with nocturnal cough and differed by asthma status (interaction false discovery rate < 0.05), with a predominance of Lachnospiraceae genera Blautia and Dorea. Thirty-two OTU were identified as having both overall effects and differences by asthma status. Among OTUs with significant nocturnal cough-by-asthma interactions, 84 retained significance in children with asthma, with 45 exclusive to those with asthma (predominance of Bacteroidaceae genus Bacteroides and Lachnospiraceae genus Dorea).

conclusionInfantile gut microbiome development is associated with nocturnal cough and differed by asthma status by age 4 years. Further studies are needed to determine if the gut microbiome may provide additional information for the early identification of children at risk for nocturnal cough, with and without asthma.

Indexed as

AsthmaCoughGastrointestinal MicrobiomeChild, PreschoolFecesFemaleHumansInfantInfant, NewbornLongitudinal StudiesMaleRNA, Ribosomal, 16SRNA, Ribosomal, 16Sasthmaearly lifegut microbiomeNocturnal cough

Identifiers

PMID39814146
PMCPMC11972882

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.