Evidence map›Paper›PMID 39813347›Full record

ArticleScience advances2025

Siderophore synthetase-receptor gene coevolution reveals habitat- and pathogen-specific bacterial iron interaction networks.

Shaohua Gu, Zhengying Shao, Zeyang Qu, Shenyue Zhu, Yuanzhe Shao, Di Zhang, Richard Allen, Ruolin He, Jiqi Shao, Guanyue Xiong and 5 more

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Characteristics of the gut-lung axis in patients with viral pneumonia and respiratory failure.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  5. Article
  6. Article
  7. Genomic Insights into Cobweb Disease Resistance inJournal of fungi (Basel, Switzerland) · 2025
    Article
  8. Probiotic paradox: bacillibactin fromISME communications · 2025
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Shaohua GuCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.ORCID 0000-0003-3071-5747
Zhengying ShaoJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Key Lab of Organic-based Fertilizers of China, Nanjing Agricultural University, Nanjing, P. R. China.
Zeyang QuCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
Shenyue ZhuJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Key Lab of Organic-based Fertilizers of China, Nanjing Agricultural University, Nanjing, P. R. China.
Yuanzhe ShaoPeking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.ORCID 0009-0003-6739-4198
Di ZhangCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
Richard AllenDepartment of Quantitative Biomedicine, University of Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland.
Ruolin HeCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.ORCID 0000-0003-2163-5526
Jiqi ShaoCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
Guanyue XiongCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.ORCID 0000-0001-5853-3799
Alexandre JoussetJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Key Lab of Organic-based Fertilizers of China, Nanjing Agricultural University, Nanjing, P. R. China.ORCID 0000-0002-6805-2486
Ville-Petri FrimanDepartment of Microbiology, University of Helsinki, 00014 Helsinki, Finland.ORCID 0000-0002-1592-157X
Zhong WeiJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Key Lab of Organic-based Fertilizers of China, Nanjing Agricultural University, Nanjing, P. R. China.ORCID 0000-0002-7967-4897
Rolf KümmerliDepartment of Quantitative Biomedicine, University of Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland.ORCID 0000-0003-4084-6679
Zhiyuan LiCenter for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.ORCID 0000-0001-6662-2636

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial social interactions play crucial roles in various ecological, medical, and biotechnological contexts. However, predicting these interactions from genome sequences is notoriously difficult. Here, we developed bioinformatic tools to predict whether secreted iron-scavenging siderophores stimulate or inhibit the growth of community members. Siderophores are chemically diverse and can be stimulatory or inhibitory depending on whether bacteria have or lack corresponding uptake receptors. We focused on 1928 representative

Indexed as

BacteriaBacterial ProteinsEcosystemEvolution, MolecularIronPseudomonasSiderophoresComputational BiologyHumansMicrobial InteractionsBacterial ProteinsIronSiderophores

Identifiers

PMID39813347
PMCPMC11734721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.