Evidence map›Paper›PMID 39813329›Full record

ArticleScience advances2025

Single-cell analysis reveals

Weihao Zheng, Michael Borja, Leah C Dorman, Jonathan Liu, Andy Zhou, Amanda Seng, Ritwicq Arjyal, Sara Sunshine, Alina Nalyvayko, Angela Oliveira Pisco and 3 more

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Microbiology spectrum · 2026
    Article
  2. The lung tissue environment inbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Weihao ZhengDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0002-8038-1207
Michael BorjaChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0009-0006-4527-3370
Leah C DormanChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-5511-887X
Jonathan LiuChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-0204-0105
Andy ZhouChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-3383-0855
Amanda SengChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0009-0000-9031-115X
Ritwicq ArjyalChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0009-0000-1416-5154
Sara SunshineDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID 0000-0002-1897-5063
Alina NalyvaykoDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, CA, USA.ORCID 0009-0006-0348-417X
Angela Oliveira PiscoChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-0142-2355
Oren S RosenbergDivision of Infectious Diseases, Department of Medicine, University of California, San Francisco, California, USA.ORCID 0000-0002-5736-4388
Norma NeffChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-7141-5420
Beth Shoshana ZhaDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Department of Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0002-4190-2823

Funding

UCSF-UCB Tuberculosis Research Advancement Center (TRAC)P30AI168440 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Babak Javid · 2022 to 2026
$5.8M
Tuberculosis Research and Mentorship Program (TB RAMP II)R25AI147375 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Elizabeth Fair, PAYAM NAHID · 2020 to 2026
$2.8M
Protein secretion in bacterial pathogensR01AI128214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 2017 to 2021
$2.0M
Diversity and function of mononuclear phagocytes in the lung driven by mycobacterium tuberculosis infectionK08HL163405 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZHA, BETH S · 2022 to 2023
$348k
NHLBI NIH HHS K08 HL163405NIAID NIH HHS P30 AI168440NIAID NIH HHS R01 AI128214NIAID NIH HHS R25 AI147375
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Bacterial ProteinsLungMacrophagesMycobacterium tuberculosisSingle-Cell AnalysisTuberculosis, PulmonaryAnimalsMiceTuberculosisBacterial Proteins

Identifiers

PMID39813329
PMCPMC11734715

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.