Evidence map›Paper›PMID 39812609›Full record

ArticleMicrobiology resource announcements2025

mpactR: an R adaptation of the metabolomics peak analysis computational tool (MPACT) for use in reproducible data analysis pipelines.

Allison R Mason, Gregory Johnson, Joseph Krampen, Jennifer N T Nguyen, Marcy J Balunas, Patrick D Schloss

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Allison R Mason *Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.
Gregory Johnson *Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.
Joseph KrampenDepartment of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.
Jennifer N T NguyenDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan, USA.
Marcy J BalunasDepartment of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0003-2374-4048
Patrick D SchlossDepartment of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-6935-4275

Funding

muMS2: an open source R package for analyzing and integrating multi-omics datasets to improve early detection and understanding of colorectal cancerU01CA264071 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALUNAS, MARCY J, SCHLOSS, PATRICK DAVID · 2022 to 2024
$1.2M
HHS | National Institutes of Health (NIH) U01CA264071NCI NIH HHS U01 CA264071
6 · The paper itself

Abstract

mpactR automates pre-processing of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data from microbiological samples to correct mispicked peaks, resolve inter-sample variation in abundance across technical replicates, account for in-source ion fragmentation, and remove background noise to yield high-quality mass spectrometry features. The package is available through CRAN and GitHub.

Indexed as

data curationmetabolomicsR packagesoftware

Identifiers

PMID39812609
PMCPMC11812337

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.